Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36690 600 / 0 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT1G60900 585 / 0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT1G60830 130 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33435 71 / 1e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 62 / 4e-10 CSTF64 cleavage stimulating factor 64 (.1) AT5G09880 62 / 8e-10 Splicing factor, CC1-like (.1) AT5G50250 59 / 2e-09 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 59 / 3e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G51300 58 / 2e-08 splicing factor-related (.1.2.3) AT4G27000 57 / 2e-08 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024026 [exp] 747 / 0 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10035713 [exp] 599 / 0 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10037299 [exp] 592 / 0 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10011791 [exp] 115 / 9e-27 AT2G33435 215 / 6e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023746 [exp] 112 / 2e-25 AT2G33435 209 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017923 [exp] 64 / 2e-10 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10002093 [exp] 63 / 3e-10 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 63 / 5e-10 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10014814 [exp] 62 / 6e-10 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028500 [exp] 634 / 0 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.005G125500 [exp] 627 / 0 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.011G050400 [exp] 514 / 3e-178 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G040900 [exp] 509 / 3e-176 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.010G068400 [exp] 99 / 2e-21 AT2G33435 237 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 70 / 2e-12 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 66 / 6e-11 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.001G340800 [exp] 63 / 1e-10 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G044900 [exp] 62 / 4e-10 AT3G47120 276 / 8e-91 RNA recognition motif (RRM)-containing protein (.1) Potri.002G061200 [exp] 61 / 1e-09 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041725 pacid=23146981 polypeptide=Lus10041725 locus=Lus10041725.g ID=Lus10041725.BGIv1.0 annot-version=v1.0 ATGAGCGACCACGGAGGAGGCGGAGGAAGTAGGTCCGAACGCAATGGTGCGGATTACGAAAAAGATGAATTCACTGCCGGTGGTGGTCCTGACAATCATG GCGATTCCAAATCCCAGCGGGACTATGACAGGGATTCAGTGAGAAGTAGGGATCGGGATAGAGAGAAGGTGCGTGACAAGGGGAGAGACCGTGACCGTTC TGATAGGGATAGGGATAGGAATAATGGTAAAGAAAGGGAGAAAAGTAGGGATATGGATCGTCACCATAGAGACCGTGATCAAAATCGTGATAGGCATGGC AGTGGGAGGGGGGAAAGAGGCAGAGATAGAGATGAGGATGATACTCGCCGTGGCAGAGACTACAACAGACGAAGAGACAATGATAGAGATCGAGAAGATT TGCCCAGGCTTCGTTCAAAGTCTCCTTCAAGGGGTAGATCAAGGTATAGATCAAAATCTCGCTCCCGATCCCGCTCGAGTTCAGGATCACGCTCTAAGAG CAAACGAGTCAGTGGCTTTGATATGGCTCCCCCTGCATCTGCAATGGCTGCTGCCGTTGCTGCTGTCAATGCTGCTACTACAGGTCAAATTCCTGGGTCT GCCCCTTCCATTCCAGGAATGTTTCCAAACTTGTTTCAGGCCCCTAATGGACAGGCTCAACAGTTTGGTTCTCTTCCCATGATGCCAATTCAAGCAATGA CTCAGCAGGCTACTAGGCATGCTCGCCGTGTCTATGTTGGAGGGCTTCCACCATCAGCCAATGAGCAGACTGTAGCTACCTATTTCAGCCAGGTCATGGC TGCGATTGGGGGAAACACTGCTGGCCCAGGGGATGCTGTTGTAAACGTCTATATAAACCATGAAAAGAAGTTTGCATTTGTGGAGATGAGATCTGTTGAG GAGGCCAGTAATGCTATGGCTGTAGATGGAATTATATTCGAGGGTGCTCCTGTTAAGGTAAGACGGCCTAGTGATTATAACCCATCCCTGGCTGCAGCCT TAGGTCCCAGCCAGCCCAGCCCTAATCTTAACCTTGCTGCGGTTGGATTGAGTCCTGGTTCTTCTGGAGCGCTTGAGGGTCCAGATCGGGTATTTGTGGG TGGCCTACCTTACTACTTCACAGAACCACAGATCAGAGAGTTATTAGAGTCTTTCGGGTCTCTTAGAGGTTTTGATCTCGTGAGAGACAGAGAAACAGGA AATTCCAAAGGCTACGCCTTTTGTGTGTATCAAGATGTTGCAGTTACAGACGTAGCATGTGCTGCGCTGAATGGAATTAAAATGGGCGACAAAACTCTCA CAGTTAGACGTGCCAACCAAAACGGCACTCAACCTAGACCCGAACAAGAAAGTGTATTGCTACATGCTCAGCAGCAGATTGCGATACAGAGGTTTATGTT ACAACCTCCAACCACTAAAGTTGTATGCCTAACGCAAGTAGTTACTGTTGATGAACTCAAAGATGATGATGAGTACGAAGAGATAATGGAGGACATGAGA ACAGAAGGCAGTAAATTTGGTACATTGGTTAACGTTGTTGTCCCGCGCCCACAACTGGATGGTAGTGTATCGTCAGGTGTTGGAAAGGTGTTCTTGGAGT ATGCAGATACTGATGGTTCGACAAACGCTAGAGCAGGCATGAACGGTAGGAAATTCGGGGGGAATGAGGTGGTGGCCGTGTTCTATCCGGAAAACATGTA CTACGCAGCCGAGTATGATGGCTAA
AA sequence Show only first row Show all	>Lus10041725 pacid=23146981 polypeptide=Lus10041725 locus=Lus10041725.g ID=Lus10041725.BGIv1.0 annot-version=v1.0 MSDHGGGGGSRSERNGADYEKDEFTAGGGPDNHGDSKSQRDYDRDSVRSRDRDREKVRDKGRDRDRSDRDRDRNNGKEREKSRDMDRHHRDRDQNRDRHG SGRGERGRDRDEDDTRRGRDYNRRRDNDRDREDLPRLRSKSPSRGRSRYRSKSRSRSRSSSGSRSKSKRVSGFDMAPPASAMAAAVAAVNAATTGQIPGS APSIPGMFPNLFQAPNGQAQQFGSLPMMPIQAMTQQATRHARRVYVGGLPPSANEQTVATYFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVE EASNAMAVDGIIFEGAPVKVRRPSDYNPSLAAALGPSQPSPNLNLAAVGLSPGSSGALEGPDRVFVGGLPYYFTEPQIRELLESFGSLRGFDLVRDRETG NSKGYAFCVYQDVAVTDVACAALNGIKMGDKTLTVRRANQNGTQPRPEQESVLLHAQQQIAIQRFMLQPPTTKVVCLTQVVTVDELKDDDEYEEIMEDMR TEGSKFGTLVNVVVPRPQLDGSVSSGVGKVFLEYADTDGSTNARAGMNGRKFGGNEVVAVFYPENMYYAAEYDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	0	1
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	1.7	0.8333
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10015239 [exp]	4.1	0.7797
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	4.2	0.8094
AT1G17665			unknown protein		Lus10003829 [exp]	5.3	0.7514
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	5.7	0.8080
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	5.9	0.8067
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	6.2	0.7363
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	7.2	0.8117
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	7.2	0.7862
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	8.4	0.8018

Compare expression of checked genes

Lus10041725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.