Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36680 360 / 9e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 319 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 168 / 3e-49 PPR336 pentatricopeptide repeat 336 (.1) AT1G55890 159 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 152 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 143 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 139 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 128 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13150 127 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G16880 127 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024025 [exp] 480 / 2e-171 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006769 [exp] 142 / 2e-40 AT1G61870 326 / 7e-111 pentatricopeptide repeat 336 (.1) Lus10020055 [exp] 142 / 2e-39 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10007619 [exp] 134 / 1e-36 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 132 / 1e-35 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 131 / 3e-35 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 130 / 7e-35 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 127 / 1e-33 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 126 / 2e-33 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028400 [exp] 342 / 6e-117 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 341 / 1e-116 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 148 / 7e-42 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 145 / 2e-40 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 145 / 2e-40 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 144 / 3e-40 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G030000 [exp] 139 / 2e-38 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 139 / 4e-38 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 139 / 4e-38 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G001100 [exp] 138 / 1e-37 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041727 pacid=23146601 polypeptide=Lus10041727 locus=Lus10041727.g ID=Lus10041727.BGIv1.0 annot-version=v1.0 ATGTTCCCCAACGCCCTCGCCACTTACCACCAGATGGACCTAGGTACTCGCCGGTCGTCCGTTTCTTTCAACGCCTTGCTCTCCGCTTGCAATCAGTCCA GACAGTTCGGCCAGGTTCCGATTCTCTTCTCCGAGATCCAATCCAAATACGGCGTCAAGCCTGATAAGATCACTTACGGTATTCTGGTCAAGTCGTATTG CGAGTCCGGGAATCCCGAGAAAGGTTTGGAGATACTGAAGGAAATGGGGCAGAAAGGTGTGGAAGTCACCGCTGTGACTTTCACCACCATTCTTGACTCA CTGTACAAAACGGGGAAAAGCGATGATGCTGATAGGCTGTGGAATAGAATGGCGAAGAAAGGATACGAAGTTGACGTTGCAGCTTACAACGTTAGAATCA TGAACGCACACGATAAGGAGCCTGAGAAGGTGAAGGAAATAATGGAGGAAATGGGGACTTCAGGGTTGAAACCTGATACCATTAGCTACAATTACTTGAT GACGTGTTACTGCAAGAATGGGATGTTGGAAGAAGCTCAGAATGTGTACAAAAGCTTGGAGGAATATGGGTGCAAGCCTTATGCGACCACTTTCAGGTCT TTGATTTACTACTTGTGTAGGAACGAAAGGTTCGAGGCAGGGTACAGGGTGTTCAAGACGAGCGTGGGGCATAATAACATCCCGGATTTTAATACGTTGA AGCATTTGGTGGATGGTTTGGTGAAAAAGAAGAGGATGAAGGATGCCAAAGGGCTGGTTCGCACCGTTAAGAAGAAGTTCCCGCCTAATGTCTTGAACGC CTGGAGGAAAGTTGAGGAAAGTCTTGCCATTGGATGTGATAATGATGGAAGTGGCGAGGATGATGATAATGAGGAAGACGAGAATAAGAGTAGAGAGGCT ACAGCTTAG
AA sequence Show only first row Show all	>Lus10041727 pacid=23146601 polypeptide=Lus10041727 locus=Lus10041727.g ID=Lus10041727.BGIv1.0 annot-version=v1.0 MFPNALATYHQMDLGTRRSSVSFNALLSACNQSRQFGQVPILFSEIQSKYGVKPDKITYGILVKSYCESGNPEKGLEILKEMGQKGVEVTAVTFTTILDS LYKTGKSDDADRLWNRMAKKGYEVDVAAYNVRIMNAHDKEPEKVKEIMEEMGTSGLKPDTISYNYLMTCYCKNGMLEEAQNVYKSLEEYGCKPYATTFRS LIYYLCRNERFEAGYRVFKTSVGHNNIPDFNTLKHLVDGLVKKKRMKDAKGLVRTVKKKFPPNVLNAWRKVEESLAIGCDNDGSGEDDDNEEDENKSREA TA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10041727 [exp]	0	1
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	5.2	0.7894
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	14.2	0.7317
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	14.5	0.6701
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	15.9	0.6707
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	20.8	0.7001
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	30.7	0.6500
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	31.3	0.6965
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	34.1	0.6990
					Lus10005748 [exp]	43.6	0.6528
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	45.1	0.6766

Compare expression of checked genes

Lus10041727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.