Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18510 432 / 1e-151 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 130 / 3e-33 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 129 / 1e-32 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G54080 120 / 3e-30 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 117 / 2e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17370 117 / 3e-29 UBP1B oligouridylate binding protein 1B (.1.2) AT1G71770 116 / 2e-28 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 112 / 4e-27 PAB3 poly(A) binding protein 3 (.1) AT2G23350 112 / 5e-27 PABP4, PAB4 poly(A) binding protein 4 (.1) AT5G19350 98 / 2e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024024 [exp] 301 / 2e-102 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 124 / 5e-31 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 124 / 6e-31 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 122 / 2e-30 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 122 / 3e-30 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10011924 [exp] 112 / 1e-27 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 112 / 2e-27 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 109 / 2e-26 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10031844 [exp] 100 / 4e-23 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028300 [exp] 469 / 4e-166 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 427 / 8e-150 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 128 / 1e-32 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 127 / 4e-32 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 122 / 2e-30 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 122 / 3e-30 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 111 / 1e-26 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.006G139300 [exp] 110 / 1e-26 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 110 / 1e-26 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 109 / 1e-26 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041728 pacid=23146978 polypeptide=Lus10041728 locus=Lus10041728.g ID=Lus10041728.BGIv1.0 annot-version=v1.0 ATGACTACTCGAATCACTCCCGGCGTGGGAGCCAATTTGCTAGGCCAGCACGCCACCGAGAGGAATCAAGACGCCACCGCCTATGTCGGGAACCTCGATC CCCAGGCTTCTGAGGAACTACTGTGGGAGTTGTTCGTTCAAGCTGGCCCCGTCGTGAATGTGTATGTACCAAAAGATAGGGTGACAAACCTGCACCAAGG TTATGGATTCGTGGAATTCCGTAGCGAAGAAGATGCTGACTATGCAATTAAGGTTTTAAACATGATCAAGCTCTATGGGAAGCCGATACGAGTCAACAAG GCATCGCAAGATAAAAAGAGCTTGGATGTTGGGGCAAATCTGTTCATCGGAAATCTTGACCCTGATGTTGATGAAAAGCTTTTGCATGATACTTTCAGTG CATTTGGAGTCATTGTTTCGAATCCCAAGATTATGAGAGATCCAGAAACGGGGAATTCTCGTGGATTTGGTTTCATTAGTTATGATTCTTTTGAGGCTTC AGATGCTGCTATTGAGGCAATGACTGGTCAATACCTTTGCAACCGTCAAATCACAGTCTCATATGCGTATAAGAAAGACACTAAAGGAGAGCGTCATGGT ACCGTGGCAGAGAGAGTGTTAGCTGCCAGCAATCAGAATACTCAGAAAAGCCGGCCTCATACTATGTTTGCCAGTGGTCCTCCATCACTAGCTGCTGTAG GGCAGGCAAATGGTGCTATGGGTGCGCCAGTGCCTCCGCGTCCCTTTGGAAATGGTGTTGTTCCTCCAGGACCAGTCCCTCAAATACGTGCTCCTCCCCC ACCAAATCCAGCCTTCTCCCAAATGCAGATGGGTGGGCAACCCCATTGGCAAGGCCAGCCTCCACAAGGCATGCCGCATATGCCTCCACCTCCAGTTCAG TACCGGCCACCTCCTCCAAACATGCCACCACCTCCTCCCCAGGGAATTCCAGGACTCCCAAGACCTCCACCCCAGCCAATGGCAATGGGAGGCCAGCCAC AAATGTGGCAGCAGCCACCTCCTCCTCAGCAGTTTGCTGGGAGGCCTTTCATGCAACAAATGCAGCCACCTCCACCGCCAAACATGCACCATCCACCTCC AAATTAA
AA sequence Show only first row Show all	>Lus10041728 pacid=23146978 polypeptide=Lus10041728 locus=Lus10041728.g ID=Lus10041728.BGIv1.0 annot-version=v1.0 MTTRITPGVGANLLGQHATERNQDATAYVGNLDPQASEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK ASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVSNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERHG TVAERVLAASNQNTQKSRPHTMFASGPPSLAAVGQANGAMGAPVPPRPFGNGVVPPGPVPQIRAPPPPNPAFSQMQMGGQPHWQGQPPQGMPHMPPPPVQ YRPPPPNMPPPPPQGIPGLPRPPPQPMAMGGQPQMWQQPPPPQQFAGRPFMQQMQPPPPPNMHHPPPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	0	1
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	2.0	0.9413
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	2.8	0.9477
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	2.8	0.9275
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	4.2	0.9272
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	4.6	0.9384
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	6.9	0.9376
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016539 [exp]	8.4	0.9183
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10011067 [exp]	9.4	0.9050
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	9.5	0.9188
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	9.5	0.9323

Compare expression of checked genes

Lus10041728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.