Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25620 473 / 7e-166 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT1G04610 463 / 9e-162 YUC3 YUCCA 3 (.1) AT4G13260 456 / 2e-159 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G11320 455 / 6e-159 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G28720 450 / 9e-157 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 449 / 2e-156 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 446 / 2e-155 YUC9 YUCCA 9 (.1) AT2G33230 440 / 1e-152 YUC7 YUCCA 7 (.1) AT4G32540 437 / 1e-151 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G21430 324 / 9e-108 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024023 [exp] 795 / 0 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10023637 [exp] 478 / 4e-168 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 471 / 3e-165 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 469 / 2e-164 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10011093 [exp] 466 / 7e-163 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 462 / 2e-161 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10035244 [exp] 448 / 7e-156 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 448 / 1e-155 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10011274 [exp] 438 / 5e-152 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028200 [exp] 596 / 0 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 491 / 6e-173 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 486 / 1e-170 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 470 / 1e-164 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 465 / 1e-162 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 457 / 2e-159 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.018G033200 [exp] 449 / 1e-156 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 442 / 4e-152 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.005G186100 [exp] 345 / 4e-116 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 338 / 2e-113 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10041729 pacid=23146837 polypeptide=Lus10041729 locus=Lus10041729.g ID=Lus10041729.BGIv1.0 annot-version=v1.0 ATGCATGTGAGCTCCCTTCATCTTATATCTCAACACTCTGCAGACATTAGGATAGAGCCTCCCAAACTCTTCATCTTTCAAGACTCTCCCTTCACTCCAA GAGACCAAACCAGAAAACTGATCCAAGTTATGCGCCAAAAGCCCAATGAAACCATACAGCAGCCAATTGTGTGGGTTCCTGGACCTGTGATCATTGGTGC AGGACCTTCAGGGCTAGCTGCAGCAGCATGTCTCAAAACCAAAGGAATCCCATTTCTAATCCTTGAGAAAGGAACCTCAATAGGTTCCTTGTGGAAGTTT GGAACTTATGACCGTTTGCAACTCCACCTTCCGAAGAAGTTCTGTGAACTACCTTACTTGCCATTCCCACCTGATTTCCCTGCATACCCAACAAAGCAAC AGTTCATATCTTACATGGAAGGCTACGCCAAGGACTTCACCATCAAACCATTGTTTTGTCAGGAGGTTCGAGTCGTTCAGTATGATCCCACCATGGGATT CTGGCAGGTTCAAGCCAGTGAGTACCAGTTTATATGCCGGTGGGTGATTGTCGCCACTGGAGAGAATGCTGAGCCGGTTCTTCCTGATATACAAGGGATG AAATGTTTCAAGGGAAGAACTTTACACACCAGCAGCTACAAAGATGGTGCTGAATTCAAAGGCAAGAAAGTTCTGGTCGTGGGTTTTGGGAATTCTGGCA TGGAAGTTAGCTTGGATCTTTTTAACAATGGTGCTGATGTTTCTGTCTCAATTAGAAATAAGCTTCATATATTGCCAAGAGAGGTTCTAGGAATCTCAAC TTTTGCTCTATCAATGTTGCTGCTAAAGTGGTTCCCTGTGAAGCTAGTTGACAAGTTGCTTATCCTTGTCTCAAGGCTTGTTCTTGGGGACACTGGTAGA GCTGGCATCACAAGACCTGAAATTGGCCCCTTGGAACTTAAGAACTCTACTGGGAAAACTCCTGTCCTTGATGTTGGAGCTTTTGCCAAAATCAAGTCTG GCCAAATCAAGATTGCGGGCGGGCTTCGAAGATTCACTAGGAATGGAGTCGAGTTTGGGGATGGAACAGTGAAGGAATTCGATGCAATTATTCTAGCAAC AGGTTACAGAAGCAACGTAACTTCATGGCTCAAGAAGGAGGAGAACTTCTTCAATGAAAAGGATGGGTACCCAAGAATGGCATTCCCAAACAATTGGAAA GGAAACAATGGAGTTTATAGCATTGGATTCAACAGGAGAGGGTTGCTAGGAGCTTCCATGGATGCAGAAAAAGTTGCAGAAGATATTGCAAGACAGTGGA ACTCTGAGACAAGGCATTTGAGGGTCCAGCCATAG
AA sequence Show only first row Show all	>Lus10041729 pacid=23146837 polypeptide=Lus10041729 locus=Lus10041729.g ID=Lus10041729.BGIv1.0 annot-version=v1.0 MHVSSLHLISQHSADIRIEPPKLFIFQDSPFTPRDQTRKLIQVMRQKPNETIQQPIVWVPGPVIIGAGPSGLAAAACLKTKGIPFLILEKGTSIGSLWKF GTYDRLQLHLPKKFCELPYLPFPPDFPAYPTKQQFISYMEGYAKDFTIKPLFCQEVRVVQYDPTMGFWQVQASEYQFICRWVIVATGENAEPVLPDIQGM KCFKGRTLHTSSYKDGAEFKGKKVLVVGFGNSGMEVSLDLFNNGADVSVSIRNKLHILPREVLGISTFALSMLLLKWFPVKLVDKLLILVSRLVLGDTGR AGITRPEIGPLELKNSTGKTPVLDVGAFAKIKSGQIKIAGGLRRFTRNGVEFGDGTVKEFDAIILATGYRSNVTSWLKKEENFFNEKDGYPRMAFPNNWK GNNGVYSIGFNRRGLLGASMDAEKVAEDIARQWNSETRHLRVQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10037311 [exp]	3.2	0.9249
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	4.5	0.9330
AT3G57930			unknown protein		Lus10031806 [exp]	4.6	0.9176
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	4.7	0.9383
					Lus10041636 [exp]	6.5	0.9303
					Lus10033439 [exp]	7.0	0.8510
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	7.2	0.9274
AT5G19875			unknown protein		Lus10006311 [exp]	10.6	0.9008
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	11.7	0.9222
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	11.8	0.9065

Compare expression of checked genes

Lus10041729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.