Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18500 81 / 2e-17 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 70 / 7e-14 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT3G52525 64 / 2e-12 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G30400 62 / 1e-10 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT2G36026 59 / 3e-10 OFP Ovate family protein (.1) AT1G06920 59 / 1e-09 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT2G36030 52 / 1e-08 unknown protein AT5G58360 54 / 4e-08 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G01840 54 / 5e-08 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT4G18830 49 / 2e-06 OFP ATOFP5, OFP5 ovate family protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011092 [exp] 69 / 4e-13 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 68 / 1e-12 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10021302 [exp] 62 / 3e-11 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10042224 [exp] 62 / 9e-11 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 61 / 3e-10 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10016978 [exp] 57 / 2e-09 AT3G52525 114 / 4e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10015236 [exp] 57 / 6e-09 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10006092 [exp] 55 / 2e-08 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10025241 [exp] 55 / 2e-08 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028000 [exp] 157 / 3e-45 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.005G125200 [exp] 151 / 4e-43 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 86 / 6e-19 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.006G156176 [exp] 72 / 3e-14 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.018G080100 [exp] 71 / 1e-13 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.009G161700 [exp] 68 / 1e-13 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.004G200500 [exp] 64 / 4e-12 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.006G205400 [exp] 59 / 2e-10 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.013G155200 [exp] 61 / 3e-10 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.019G128500 [exp] 61 / 3e-10 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10041730 pacid=23146906 polypeptide=Lus10041730 locus=Lus10041730.g ID=Lus10041730.BGIv1.0 annot-version=v1.0 ATGAGAGGAGTGATCTCTTCTTTCCAAAACTGCCGCTCCAAAGATCCATCCACCCTCCCTGTCCTCCCTTCCTCTTCTTCCTCCTCCGCCGCACTTCAGT ACTCTTCCATCAAGCGCCATGTGTCCTCCGCCATCACCTCCGTCGGCTGCGGCTGCGCTTCCGCTTCCTCCACCGCCTCCTCCCACTCCCACTCCTCTCG CCACCCTATGAAGCACGCCTTCCAGTGGGAGGAGGACGATAAATGGCTCGTGGTCGCTAACATTACTCAAATCCGCCGCAGCGAAATTTCCGCGGCCTCG GTGGTGGACCCCACGCTGCCGACGCCATCAAGGACGAAACGGCGCGTCCGTAAGAACAAAACGACGACGAGGGGTATGATCCGCATCTCAACCTCCTCAG CCGGCTCTGGAATCTTCAGCGACGACTGTGATGACAACGACATCGAAACCGAGGCGTTGGTGTCGTCTTCCAGAAGCTTCTCTACCGGAGATGATGATTC TTCTTCATTCAACCCTCAGTTGGAGACCATACGCGAAGCAGCAGCTGCTGACTCGAGGAGGAAGATGAAACGGCGTCGGAGACGGAGGAGGAAGAAGAGT GATGAGGGGAGGAAGAGCGGTGAGGTTGGGTCGCCAGCGAGGCTGTCGAAGTTCCAGAAGTGGGTGATGCCGGGGTGCAGGGTGGCAGAAGGGAAAGTGA GGGAGAGCTACGCGGTGGTGAAGAAATCAGAGGACCCGAAGGAGGATTTCAAGAGGTCGATGGCGGAGATGATAATGGAGAAGGAGATGTACGAGGAGGA TGATTTGGAGGAGCTGCTTCAGTGTTTCTTGTCCTTGAATTTAAAGGCTCACCACGGGGTCATCATCCAGGCTTTCTCCGAGATCTGGCAGGAGATTTGT TAG
AA sequence Show only first row Show all	>Lus10041730 pacid=23146906 polypeptide=Lus10041730 locus=Lus10041730.g ID=Lus10041730.BGIv1.0 annot-version=v1.0 MRGVISSFQNCRSKDPSTLPVLPSSSSSSAALQYSSIKRHVSSAITSVGCGCASASSTASSHSHSSRHPMKHAFQWEEDDKWLVVANITQIRRSEISAAS VVDPTLPTPSRTKRRVRKNKTTTRGMIRISTSSAGSGIFSDDCDDNDIETEALVSSSRSFSTGDDDSSSFNPQLETIREAAAADSRRKMKRRRRRRRKKS DEGRKSGEVGSPARLSKFQKWVMPGCRVAEGKVRESYAVVKKSEDPKEDFKRSMAEMIMEKEMYEEDDLEELLQCFLSLNLKAHHGVIIQAFSEIWQEIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	0	1
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	1.7	0.9452
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	6.0	0.9339
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	6.3	0.9344
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	8.0	0.9254
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	9.5	0.9288
AT4G27660			unknown protein		Lus10032928 [exp]	10.6	0.9434
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	10.7	0.9086
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	11.5	0.9203
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10015356 [exp]	12.2	0.8708
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	14.4	0.9192

Compare expression of checked genes

Lus10041730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.