Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36670 642 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 625 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT3G18830 588 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 573 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 570 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G20780 393 / 6e-132 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 216 / 6e-64 ATINT1 inositol transporter 1 (.1) AT1G30220 193 / 9e-55 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT5G16150 187 / 5e-53 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G50310 186 / 9e-53 ATSTP9 sugar transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026032 [exp] 774 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 773 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10042339 [exp] 592 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 589 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 587 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 561 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 556 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 547 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 545 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027900 [exp] 738 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 600 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 560 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 559 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 442 / 4e-152 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 406 / 3e-137 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 398 / 4e-134 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 220 / 2e-65 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 214 / 3e-63 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 191 / 1e-54 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10041731 pacid=23146749 polypeptide=Lus10041731 locus=Lus10041731.g ID=Lus10041731.BGIv1.0 annot-version=v1.0 ATGACGAATGCGATCACCGCCGATACCGGCGAGAAATTCAATTACTATGCGGCGGCTTGCGCCATCGTTGCTTCCATGATATCCATCATCTTTGGATATG ATACTGGAGTGATGAGTGGAGCAATGATCTTCATCAAAGAAGATTTGAAAATCCACGACACACAGGTAGAAGTCCTCGCCGGAATCCTCAACATCTGCGC CCTCGTCGGCTCCCTCATGGCCGGACGAATCTCCGATTACATCGGCCGTCGATACACCATCATCACGGCGTCGATCATTTTCCTCATCGGCTCCGTCTTC ATGGGATGGGCCCCCAACTACGCTATCCTGATGACCGGACGGTGCGTCGCCGGAATCGGAGTCGGATTCGCGCTCATGATCGCCCCGGTCTACTCTGCCG AAGTCTCCTCGGCCAGATCCCGCGGATTCCTGACGTCGCTCCCGGAGTGGGGGATCAGCATCGGAATCCTTCTCGGATACATCTCCAACGTCCTGTTCGC CAAGCTTCCACTGAAGCTCGGGTGGCGACTCATGCTCGGAATCGCGGCGATTCCGTCGCTGTTCCTCGCGATCGGGATCCTGAAAATGCCGGAATCCCCG CGTTGGCTGATACTGCAAGGGAGGCTCGGCGAGGCGAAAGCGATCCTGATGAAAGTTTCGAATTCAAAAGAGGAGGCCGAGAATCGATTGCGAGACATCA AATCGGCAGCAGGAATCGACCCGAATTGCGAGGCGGAGACGGTTGAGATTCCGAAGAAGGAATCAGGAGGGAAAGGAGTGTGGAAGGAGCTTATATTGAG GCCGACTCCCGCCGTTCGGATGATCTTAATTGCGGCGATCGGAATACATTTCTTCGAACACGCGGTGGGCATCGAGGCGGTGGTTCTTTACAGTCCGAGG ATCTTCAAAAAGGCCGGAGTGACGAGCAAGCACAAGCTCCTCCTCGCTACCGTGGGAGTCGGATTGACGAAATTCACCTTCATCGTTATCTCGACGTTTT TGCTGGACCGGGTCGGGCGTCGGAGCCTGCTGTTGTTCAGCATGACCGGGGTTATTGGGGCGTTGACTGTACTGGGGACGTGTCTGACGATTGTTGAGAA GCATCAGGGGGAGAAACTCGCGTGGGCCCTCGGATTGAGTATCGCATCGACTTATACATTTGTGGCATTTTTCAATGTCGGATTGGCCCCGGTCACTTGG GTTTATAGTTCCGAGATTTTCCCGTTGAGGTTGAGGGCTCAGGGGTACAGTATTGGTGTGGCTGTGAATAGATTGACGAATGCGATAATTTCGATGACGT TTATATCGTTGTACGAGGCGATTACGATCGGAGGGGCATTCTTTTTGTTCGCGGGGATATCGGTGGTCGGGTGGCTGTTTTTCTACTTCATGTTTCCTGA GACGAAAGGGAGGACGTTGGAGGAAATGGAAGAGTTGTTTGGGAAAGGGTTCGGGTCGGGTCTTTCTGCAAATCCTAAATCCAATAAAGTGGAAGATACT GTTTAA
AA sequence Show only first row Show all	>Lus10041731 pacid=23146749 polypeptide=Lus10041731 locus=Lus10041731.g ID=Lus10041731.BGIv1.0 annot-version=v1.0 MTNAITADTGEKFNYYAAACAIVASMISIIFGYDTGVMSGAMIFIKEDLKIHDTQVEVLAGILNICALVGSLMAGRISDYIGRRYTIITASIIFLIGSVF MGWAPNYAILMTGRCVAGIGVGFALMIAPVYSAEVSSARSRGFLTSLPEWGISIGILLGYISNVLFAKLPLKLGWRLMLGIAAIPSLFLAIGILKMPESP RWLILQGRLGEAKAILMKVSNSKEEAENRLRDIKSAAGIDPNCEAETVEIPKKESGGKGVWKELILRPTPAVRMILIAAIGIHFFEHAVGIEAVVLYSPR IFKKAGVTSKHKLLLATVGVGLTKFTFIVISTFLLDRVGRRSLLLFSMTGVIGALTVLGTCLTIVEKHQGEKLAWALGLSIASTYTFVAFFNVGLAPVTW VYSSEIFPLRLRAQGYSIGVAVNRLTNAIISMTFISLYEAITIGGAFFLFAGISVVGWLFFYFMFPETKGRTLEEMEELFGKGFGSGLSANPKSNKVEDT V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10041731 [exp]	0	1
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10007084 [exp]	1.7	0.9428
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	9.0	0.9373
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	10.1	0.9409
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	11.5	0.9103
					Lus10016424 [exp]	11.6	0.9036
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	12.0	0.9309
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	12.0	0.9286
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	12.3	0.9366
					Lus10026417 [exp]	13.6	0.9091
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	16.3	0.9243

Compare expression of checked genes

Lus10041731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.