Plant FIBer expression Database

Lus10041732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36650 553 / 0 ATPBRP plant-specific TFIIB-related protein (.1.2)
AT2G41630 96 / 8e-22 TFIIB transcription factor IIB (.1)
AT3G10330 94 / 6e-21 Cyclin-like family protein (.1)
AT4G10680 49 / 2e-06 transcription factor IIB (TFIIB) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024022
[exp]
898 / 0 AT4G36650 610 / 0.0 plant-specific TFIIB-related protein (.1.2)
Lus10035440
[exp]
86 / 5e-18 AT3G10330 603 / 0.0 Cyclin-like family protein (.1)
Lus10016260
[exp]
84 / 1e-17 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1)
Lus10031055
[exp]
67 / 6e-12 AT3G10330 355 / 7e-124 Cyclin-like family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G027600
[exp]
659 / 0 AT4G36650 575 / 0.0 plant-specific TFIIB-related protein (.1.2)
Potri.016G057100
[exp]
96 / 1e-21 AT3G10330 611 / 0.0 Cyclin-like family protein (.1)
Potri.006G048400
[exp]
94 / 4e-21 AT3G10330 605 / 0.0 Cyclin-like family protein (.1)
Potri.017G093100
[exp]
69 / 2e-12 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1)
Potri.015G067500
[exp]
64 / 7e-11 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0065 Cyclin PF00382 TFIIB Transcription factor TFIIB repeat
Representative CDS sequence
>Lus10041732 pacid=23146729 polypeptide=Lus10041732 locus=Lus10041732.g ID=Lus10041732.BGIv1.0 annot-version=v1.0
ATGAAGTGCCCCTACTGCTCATCCCCGCAGGGCCGGTGTTCGACGACGTCCACCGGCCGATCAATCACCGAGTGCACTTCCTGTGGCCGCGTTGTCGAGG
AGCGTCAATTTCAAACTCACCATCTCTTCCACATTCGAGCCCAAGACAATCCACTCTGCCTAGTCACCTCCGACCTTCCCTCTGTCCCCCACGACCACCT
TCAACGGCACCAAAAAACAGCCGACCAAGGGCCCGACGATGAAAAAGAAGAAGAAGAAGATCCTTTCGAGCCGACAGGATTCATCACCGCCTTCTCTACC
TGGTCTCTCGAGCCAACCCCGCTCTCTCTCCGCTCTTCCCTCTCCTTCTCCGGCCACCTGGCGGAGCTCGAGCGCGTCCTCGAATTGACCACGGGATCGT
CGGCCAGCGCCTCTGCGTCAAATAATTCCAACTCGTCGACGGTCATAATCGATGTAGCTTCCATTCTAGGGTTGGATTCAGATATATCCGATCACGCTTT
CCAGCTTTTTAGGGATTGTTGCTCTGCTACTTGCTTGAGAAACCGCAGTGTAGAAGCACTTGCCACCGCCGCCCTCGTTCAAGCCATTCGAGAGGCTCAG
GAACCTCGAACTCTCCAGGAAATCTCGATTGCTGCGAATGTGCCACAGAAGGAGATTGGAAAGTACATCAAGATTCTAGGAGAAGCTCTGCAGCTTAGTC
AACCCATTAACAGCAACTCTATCTCTGTTCATATGCCCAGATTCTGCACCCTTCTCCAACTCAACAAATCTGCTCAGGAATTGGCCACGCACATAGGGGA
AGTGGTCATAAACAAGTGTTTCTGCACACGAAGAAACCCCATTAGCATATCAGCTGCAGCCATATATCTGGCATGCCAGTTAGAAGACAAGAGAAAGACA
CAAGCGGAGATTTGTAAGGTTACAGGGCTTACTGAGGTTACACTGAGGAAAGTATACAAGGAACTTTTGGAGAACTGGGATGATCTGCTCCCTTCAGATT
ATACTCCAGCTGTCCCTCCAGAGAAAGCCTTTCCCACCACTATATTTATTTCAGGACGTTCAGTGGGGGCTAGAGCTGAGCCACTCGACCTAATGTCTTC
AGACAAGCCCAATAACGAGCCTATGTCCCGTGGTAAAGAAACGAATGAAGGCAATGGAAGTTCACAGGGTGTCCCTAGCCCTGCATGGCATAGTTTCAGG
CAGCCATGGGTTCAGTTTACTACAACACCAGGAGATACCAGTGCTTCTCAGTCTAGTCGTTTGGAGCTGGATGATAAAGATAAGCACAAGATGGACACTT
CAGCTGGTGTTAGGGGAAACCAATTTCCAACTACGCCTTCTTCGTCGAGTGTGAGTACGATCACTTGGCCGTTTCGGTCAACTTCTTCTACAGCTGGTTC
TCCAATTGTGCAGCCCCCGCCTAAGCTGGCGCCGGGCTTTGCAGAACTTAAAGCTGTTGGAAACCAGAAAGGAGGTAAATCTGCAACCGGTGGAGATGGC
AAGTGGCGTATTTGA
AA sequence
>Lus10041732 pacid=23146729 polypeptide=Lus10041732 locus=Lus10041732.g ID=Lus10041732.BGIv1.0 annot-version=v1.0
MKCPYCSSPQGRCSTTSTGRSITECTSCGRVVEERQFQTHHLFHIRAQDNPLCLVTSDLPSVPHDHLQRHQKTADQGPDDEKEEEEDPFEPTGFITAFST
WSLEPTPLSLRSSLSFSGHLAELERVLELTTGSSASASASNNSNSSTVIIDVASILGLDSDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQ
EPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKT
QAEICKVTGLTEVTLRKVYKELLENWDDLLPSDYTPAVPPEKAFPTTIFISGRSVGARAEPLDLMSSDKPNNEPMSRGKETNEGNGSSQGVPSPAWHSFR
QPWVQFTTTPGDTSASQSSRLELDDKDKHKMDTSAGVRGNQFPTTPSSSSVSTITWPFRSTSSTAGSPIVQPPPKLAPGFAELKAVGNQKGGKSATGGDG
KWRI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G36650 ATPBRP plant-specific TFIIB-related p... Lus10041732
[exp]
0 1
AT4G22285 Ubiquitin C-terminal hydrolase... Lus10003795
[exp]
4.0 0.8602
AT1G47720 OSB1 Organellar Single-stranded, Pr... Lus10021767
[exp]
4.7 0.8880
AT3G50000 ATCKA2, CKA2 "casein kinase II, alpha chain... Lus10011534
[exp]
6.2 0.8734
AT2G42260 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 ... Lus10024522
[exp]
6.3 0.8431
AT1G56290 CwfJ-like family protein (.1) Lus10022209
[exp]
7.3 0.8523
AT1G26190 Phosphoribulokinase / Uridine ... Lus10030919
[exp]
14.4 0.8470
AT5G41970 Metal-dependent protein hydrol... Lus10017324
[exp]
14.4 0.8326
AT5G38720 unknown protein Lus10008877
[exp]
15.9 0.8458
AT2G02148 unknown protein Lus10035090
[exp]
21.0 0.8017
AT1G56290 CwfJ-like family protein (.1) Lus10021219
[exp]
23.0 0.8828

Lus10041732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.