Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 70 / 1e-12 F-box family protein (.1) AT5G49610 68 / 3e-12 F-box family protein (.1) AT1G47790 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G26010 54 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G09190 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT3G06240 53 / 3e-07 F-box family protein (.1) AT1G47300 52 / 5e-07 F-box family protein (.1) AT3G10240 47 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT5G03970 46 / 5e-05 F-box associated ubiquitination effector family protein (.1.2) AT1G11620 45 / 0.0001 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024021 [exp] 776 / 0 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10014320 [exp] 178 / 4e-51 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10015048 [exp] 66 / 3e-11 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 61 / 6e-10 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 57 / 1e-08 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10026028 [exp] 51 / 7e-08 ND 37 / 6e-04 Lus10002769 [exp] 52 / 4e-07 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10013872 [exp] 49 / 6e-06 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10042989 [exp] 47 / 8e-06 AT5G07610 82 / 9e-19 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124500 [exp] 313 / 2e-102 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.007G027200 [exp] 304 / 3e-99 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.007G027300 [exp] 192 / 3e-56 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.010G224400 [exp] 78 / 3e-15 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.010G254000 [exp] 76 / 1e-14 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.015G028500 [exp] 68 / 4e-12 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.005G254633 [exp] 67 / 1e-11 AT4G09190 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) Potri.005G254500 [exp] 66 / 2e-11 AT4G09190 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Potri.007G037500 [exp] 65 / 3e-11 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.008G038000 [exp] 62 / 3e-10 AT1G64290 175 / 3e-51 F-box protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041733 pacid=23146822 polypeptide=Lus10041733 locus=Lus10041733.g ID=Lus10041733.BGIv1.0 annot-version=v1.0 ATGGCTAATTCTGATAAGATGGAGAAAATCCAGATGGAAGATCTGGATGGTGGCTTTGTTCTTGTTGGTTTCGAAGAATCTGATGAAGACCAAGCTCATT TAATTTCTGACGACAAATCTGATGTGAGGTTTTACTCTTCAAACCTCGATCATATGTTTCCTGATGAATATCCAAATTTGATGTCGCGTTTTGCCATTAC CTTTATTCGACAGGATGTAACGTTCTCACCGACGAAACGTTTTGCAACTGACATTCAAGCAAAGCGAGAAGACATCAAAGAACCCTCAGAACAAGAATCT GATGAAGAAGAACAAAGTCTTCTCACTTCTGACGACGAATCTGCATACTACGATGGTGTAAGTTTTTCACCGAGGAAACGTTTCACAACTAACATTCAAG CGAAGGGAGAAGACATCAAAGAAGTGATCAAACGGCAGGTTCTCACTTTCCTTCCTGCAAAGTCAGTTTGCAGGTTCAAAGCCGTTTCGAAAAACTGGGA CAGTTGGATCTCCTGTCCTTTATTCGCCCACCAGCAATCCTTATGTTTCAACGCCATCTCCGGCCTCTTCTCCCAACTGCCTGGCGAAACCCCATCCTTC GTATCCCTCCATCGAGACTCTTGTGGCGTACCGAACCCTTCCCTCATATTCTTACCCGAACCGGTTGAGGTTCGAGCCACTAACGGTGGTTTGCTCTGCT GCCAGAGCCATGTAGGTTCCTACTACATATGCAACCCGGTAACGAAACTCTGGACGAAGCTTCCCGAGCCAAGTTTGTATCATGGACCGGAGACAGTTGT AGGACTCACCTTCGAGCCTTCCAAATTCAACTTCACCGAGCATTATCAGCTTGTTTGCGCTGTCGTTAGCTCGATTCTCGACGATTACAGTCCTCCAGTC GTCTCGTTTGAGGTATTCTCCTCGAGATCAGCTGAATGGAGGGTGTGTGATAGCATGTCTTGCTCTGATTTGGGTGGATTCTCGGGTGATGGATTGTACT TGGATGGATTTGTGTACTGGGAGACCAGAGTAGGTACCGTGCTGGCGTTTGATGTGAAGAATGAAGACTTTGGGATCCTGACTCTGCCATATAACAGTGG ACCTGACGGAACTCTGTCGGTTATGAACGATGAACTATGCTATCTGGTGCCGGTCTTTGATGGTGAGGGGTTGGAGTGGACGGTGGATGTTTATGGGAAT CTTGATATGAGGCTTAAGCGTGTGATCCGGTTGACAGGAAGTGCATACAGCATGTCTGGGAAGTGTCGAGTTTTGGCTTTCGCTAACGAGAAGTTGCTGA TTGCGATATTCGGTGGGAGGAGCATTGTGGCTTATGATGTTGAAGCTGAGGAGGAGAAGTGGCTTGGGAGTGCAAGCGTTGATGGGTTTGGAAAGTACGT GCCGTATGTGAATAACCTGGTGAATGTTCCTGCTGAACAGGAGGGTGGATATGGGGGTCTTTTTGACACCGCAGCTATGGATCTCATGAATTAG
AA sequence Show only first row Show all	>Lus10041733 pacid=23146822 polypeptide=Lus10041733 locus=Lus10041733.g ID=Lus10041733.BGIv1.0 annot-version=v1.0 MANSDKMEKIQMEDLDGGFVLVGFEESDEDQAHLISDDKSDVRFYSSNLDHMFPDEYPNLMSRFAITFIRQDVTFSPTKRFATDIQAKREDIKEPSEQES DEEEQSLLTSDDESAYYDGVSFSPRKRFTTNIQAKGEDIKEVIKRQVLTFLPAKSVCRFKAVSKNWDSWISCPLFAHQQSLCFNAISGLFSQLPGETPSF VSLHRDSCGVPNPSLIFLPEPVEVRATNGGLLCCQSHVGSYYICNPVTKLWTKLPEPSLYHGPETVVGLTFEPSKFNFTEHYQLVCAVVSSILDDYSPPV VSFEVFSSRSAEWRVCDSMSCSDLGGFSGDGLYLDGFVYWETRVGTVLAFDVKNEDFGILTLPYNSGPDGTLSVMNDELCYLVPVFDGEGLEWTVDVYGN LDMRLKRVIRLTGSAYSMSGKCRVLAFANEKLLIAIFGGRSIVAYDVEAEEEKWLGSASVDGFGKYVPYVNNLVNVPAEQEGGYGGLFDTAAMDLMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	0	1
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	10.8	0.8953
AT1G79910			Regulator of Vps4 activity in ...		Lus10037536 [exp]	12.7	0.8513
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	18.3	0.8919
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	20.3	0.8919
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	21.4	0.8913
AT5G35690			unknown protein		Lus10002262 [exp]	23.5	0.8831
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	25.0	0.8895
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	25.4	0.8640
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037785 [exp]	30.8	0.8648
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	31.5	0.8891

Compare expression of checked genes

Lus10041733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.