Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 567 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 520 / 2e-178 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24550 510 / 6e-175 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G18810 488 / 2e-165 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G49270 485 / 2e-164 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G52290 459 / 4e-157 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 433 / 7e-147 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G23540 433 / 7e-144 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 430 / 9e-143 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 410 / 9e-136 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024020 [exp] 865 / 0 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 644 / 0 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10011098 [exp] 525 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10014319 [exp] 520 / 0 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 523 / 2e-179 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 512 / 6e-176 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10026335 [exp] 476 / 3e-164 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 478 / 2e-163 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026027 [exp] 474 / 7e-163 AT2G18470 420 / 5e-141 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124400 [exp] 568 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 557 / 0 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 542 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 499 / 2e-170 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 497 / 7e-170 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 464 / 3e-158 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 463 / 2e-157 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 437 / 2e-145 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 427 / 1e-141 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 425 / 1e-140 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041734 pacid=23146772 polypeptide=Lus10041734 locus=Lus10041734.g ID=Lus10041734.BGIv1.0 annot-version=v1.0 ATGCCGGCCACATCCAATGAGCAAACCGGTACGGAAACCACAAACTCAAAACCGGATAACGGTTCGACTCATGACCAGACGAGGATTCCCCAGACTACGA CGCCGCCAGGTTTGCGGACGACGACCAAGTTCACCGACGAAATCAAGGCGCTGACGCCGCCGGGGGCTGAGATGTGGAAGAGCGCAACCAGCGGCATTTC TCAAGAACAGATTAAGCTGATCGTCGGAATATCCGTCGGGGTGGGGCTTTTTTTTATCATCTTAATCATCATTTGCATCTGTTGCTGCTGCTGCTGTAGG AAGAAGAAGAAACACAAGGATAATAAGAATCAAAATCAGATGAATTACTACGGCGAGTACCCGATGGGCCCGCCGCCGCCTCCTCCGGAGCAATACTACA TGAGCAGCGGCCAATTCCCCTCCGGACCTACGCCGCAGCAGAAATGGCAACAATCTCCCGGTCATCCTCCTCCGCCGCCGATGGGAATGAATTACAGCGG CGGAAGCGGGTGGCAGAGTGGGCCGTCGATGTCGAGCGGGAATTACTCCAACCTCCAGCCTCCGCCTCCGCCGCCGCCGATCTCGCTAGGGTTCAACAAG AGCACGTTTACGTACGAGGAGCTGATGGCGGCCACTGGAGGGTTTACTCAGTCGAATCTGTTGGGACAAGGAGGGTTCGGGTATGTACATAAGGGGGTTT TGCCCAACGGGAAGGAAGTAGCGGTGAAAAGCTTGAAATCTGGGAGCGGGCAGGGAGAGAGGGAATTTATGGCGGAGGTTGAGATTATTAGTAGAGTTCA TCATCGGCATCTGGTGTCGCTGGTTGGGTACTCTGTTACTAATCAGCAGAGGCTTTTGGTGTATGAGTTTCTTCCCAATGACACCCTCGAACATCATCTC CATGGGAGGGGTCTTCCTATTTTGGATTTCCCTACAAGGCTCAGAATAGCATTGGGTTCCGCCAAGGGACTTGCTTACCTCCATGAAGATTGTAAGAACA ACCAACCTATTCGCGAACGAACTGAGTCGAGTCACCCAAAGATCATTCATCGTGACATCAAGTCGTCCAACATTCTCTTGGATCTGAACTTCGATGCTAA GGTGGCTGATTTTGGGTTGGCTAAGCTATCTACTGACAACCACACTCATGTTTCCACGCGTGTAATGGGCACATTCGGGTATTTGGCTCCGGAATATGCA TCCAGCGGGAAGCTGACGGAGAAATCTGATGTTTTTTCATTTGGGGTGATGCTCTTGGAACTCATTGCTGGCAAGAGACCCGTTGATCCTACGAATGTCA TGGAAGATAGCTTGGTCGATTGGGCTCGACCTCTACTGACCCGAGCACTAGACGAAGGGAACTTCCACGAGTTGGTCGACCTTCGACTAGAAGGAAACTT CAATCCTAACGAAATGCAGCGGATGATCGCTTGTGCTGCTGCTAGCATCCGCCATTCTGCTAAGAAGCGCCCCAAGATGAGCCAGATAGTACACACGTTG GAAGGAGATGCATCGCTAGAGCAGTTGAATGAGGGGGTCAGGCCGGGTCAAAGTACTGTCTTCGGGGTAGCTGGCGGGAGCGGAGGAGAGTACGACATGG GTGCTTACAACGCTGACATGGCAAGGTTCCGGCAAGTGGCATTGTCAAGCCAAGAATTCAATAGCAGCGAACATGGAACCTCGTCGACAACGACTAGCGA TTCCCGGGACATTGCACCAGCAGCTCTTCGCAAGTATAACCTGTGA
AA sequence Show only first row Show all	>Lus10041734 pacid=23146772 polypeptide=Lus10041734 locus=Lus10041734.g ID=Lus10041734.BGIv1.0 annot-version=v1.0 MPATSNEQTGTETTNSKPDNGSTHDQTRIPQTTTPPGLRTTTKFTDEIKALTPPGAEMWKSATSGISQEQIKLIVGISVGVGLFFIILIIICICCCCCCR KKKKHKDNKNQNQMNYYGEYPMGPPPPPPEQYYMSSGQFPSGPTPQQKWQQSPGHPPPPPMGMNYSGGSGWQSGPSMSSGNYSNLQPPPPPPPISLGFNK STFTYEELMAATGGFTQSNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGYSVTNQQRLLVYEFLPNDTLEHHL HGRGLPILDFPTRLRIALGSAKGLAYLHEDCKNNQPIRERTESSHPKIIHRDIKSSNILLDLNFDAKVADFGLAKLSTDNHTHVSTRVMGTFGYLAPEYA SSGKLTEKSDVFSFGVMLLELIAGKRPVDPTNVMEDSLVDWARPLLTRALDEGNFHELVDLRLEGNFNPNEMQRMIACAAASIRHSAKKRPKMSQIVHTL EGDASLEQLNEGVRPGQSTVFGVAGGSGGEYDMGAYNADMARFRQVALSSQEFNSSEHGTSSTTTSDSRDIAPAALRKYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10041734 [exp]	0	1
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	10.6	0.8380
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10007383 [exp]	36.9	0.8022
AT5G63135			unknown protein		Lus10019491 [exp]	38.7	0.7927
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	42.1	0.7368
AT3G08880			unknown protein		Lus10012504 [exp]	64.4	0.7735
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	66.9	0.7901
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	68.7	0.7703
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	71.8	0.7296
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	94.4	0.7202
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	106.8	0.7049

Compare expression of checked genes

Lus10041734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.