Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66750 1044 / 0 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G18620 454 / 5e-145 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 450 / 8e-144 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G19310 429 / 1e-135 Homeotic gene regulator (.1) AT3G06010 422 / 1e-132 ATCHR12 Homeotic gene regulator (.1) AT2G13370 389 / 5e-117 CHR5 chromatin remodeling 5 (.1) AT2G28290 389 / 2e-116 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G31900 354 / 5e-107 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G25170 354 / 9e-106 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G44980 336 / 1e-102 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024019 [exp] 1419 / 0 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10033967 [exp] 444 / 1e-136 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 423 / 2e-133 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 423 / 3e-133 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10022423 [exp] 389 / 9e-117 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 382 / 7e-115 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10012798 [exp] 379 / 7e-113 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10005339 [exp] 358 / 7e-107 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 357 / 2e-106 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026700 [exp] 1156 / 0 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.019G129900 [exp] 1149 / 0 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G021400 [exp] 445 / 6e-142 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 445 / 9e-142 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 416 / 3e-130 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 414 / 1e-129 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.009G047800 [exp] 399 / 1e-120 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.001G253400 [exp] 399 / 2e-120 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.010G019150 [exp] 391 / 4e-117 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 388 / 4e-116 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041735 pacid=23146608 polypeptide=Lus10041735 locus=Lus10041735.g ID=Lus10041735.BGIv1.0 annot-version=v1.0 ATGTCCACTTCTCTGCAATCTGTCGCCGGCCAAGCTTCCTCTAATCAACCTGTTAGTCGAAATTGTGAGCGATTCCTGCTGTGTAAGGCGTCTCTGACTG TGTTACCGGTGTGTATGTTAGGTCCTGATGCTCTCATTGAGGAAGAGATAAAGAATGAAGCTCCTGCCGACTCTCCGACCTCGGTTCTCGAAGATGAGGA TAATGGCCATAACGAAATGGATGTAAAGTCCGAGGAAGATCCTCTGTTAGCGGTAAGTATTGGAGATGGTTCGCCCATATCAAGGGCCATGGCAGAGGAG GAAGAAAAATTGATGAACAGCAGGGAAAGAGAAGAAGCAAAAGGAAATGTGAAGGAAGAGGCACCTCACTTGAATGATTCTCAGTTTAACAAGTTGGATG AGCTCCTTACTCAGACACAGCTCTACTCAGAGTTTTTATTAGAGAAGATGGATGACATCACAAATAATGGAGAAGAGCAAGAAAATGAAACTGTCGGGAC CAAGAAAGGCCGTGGTTCAAAGAGAAAAGCTGGAGCAGGATGCAATACGAGAAGAGCCAAGAGGGCAGTTGCAGCTATGATTACGAGATCAAAAGAAGTT GAAAGTGCTGATGATGCGAATCTGAGTGTAGAGGATAAGGTTGAGAAAGAGCAGAGGGAGCTGGTGCCTTTGTTAACGGGTGGCAAGCTGAAGGCTTATC AACTAAAAGGTGTGAAGTGGTTAATATCTTTGTGGCAGAATGGGCTCAATGGGATTCTTGCTGATCAGATGGGGCTTGGGAAAACCATTCAAACAATTGG TTTCCTTGCACATCTTAAAGGGAAGGGTTTGGATGGTCCCTATTTAATAATAGCTCCACTTTCTACTCTGGCAAATTGGATGAATGAGATTTCAAGGTTC GCACCATCTCTGAATGCAGTCATCTACCATGGTGACAAGAAACAGAGAGATGAGATAAGGAGGAAACACATGCCTAAATCTATAGGCTCGAAATTTCCCA TTATTATCACGTCGTATGAAGTTGCGTTATTTGATGCAAAAAGGTTTCTGAAGCATTACACTTGGAAGTATGTTGTGGTTGACGAAGGTCACAGATTGAA GAATGCCAAGTGTAAGTTGGTGCAACATCTGAAGTATCTTCCGATGGAGAATAAGCTTCTATTAACTGGAACACCTCTGCAGAACAATCTTGCTGAGCTT TGGTCCTTGCTAAACTTCATTTTACCTGATATTTTTCAGTCTCATGAAGAATTTGAGTCATGGTTTGATCTGTCAGGAAAGTGCAACAGCAAGGCCACAG TAGCAGAACTTGAAGAAAAGAGGAAATCTCAGGTTGTGGCAAAACTTCATGCCATCCTCCGTCCATTTCTCCTCAGAAGATTGAAGGCTGATGTTGAGCT CCTGCTTCCCAGCAAGAAAGAGATAATATTATATGCAACCTTGACTGATTATCAGAAGAACTTCCAGGAACACTTGATTAATAGGACATTGGAAAAACAT TTGCTAGACAAGGTGGATTTAGGACGTGGCATGAAAGTTAAGCTAAACAATTTAATGATTCAGCTGCGCAAGAACTGCAACCACCCAGATCTTTTGGAGT CTGCCTTCAATGGCTCATATTTGTACCCACCTGTTGAGCAGATTGTTGAGCAATGTGGCAAGTTCCAGTTGTTAGAAAGATTGCTCAAGCGATTGTTTGA AGATAAGCATAAAGTTCTGATATTCACCCAGTGGACTAAGATTCTGAATATTATGGACTACTATTTTTGTGAAAAAGGATTTGAGGTGTGTAGAATTGAT GGCAGTGTCAAACTGGAAGACAGAAGAAGACAGATTGCGGAATTCAATGATCCGGACAGCACTTGTAGGATATTTATTCTTAGCACAAGAGCTGGTGGAT TAGGTATCAACCTCACTGCAGCAGATACATGCATACTCTATGATAGTGACTGGAATCCACAAGTGGATTTGCAGGCAATGGACCGGTGTCATAGAATTGG ACAGACCAAACCCGTACATGTTTACAGGCTTGCAACAGCACAATCTGTCGAGGGTCGTTTGCTGAAAAGGGCTTTCAGTAAGCTGAAGTTGGAGCATGTT GTAATCGGGAAGGGACAGTTTCATCAAGAACGGACCAAGGCTAACCCTTTAGCTGACATGGAGGAAGAGGATATCCTAGCACTGCTACGTGATGAGGAAA GCGCTGAAGACAAACTGATACAAACAGACGTCAGTGATGAAGATTTGGAGAGAATTATGAATAGAAGTGATCTTATCAACAGTCCCGAGGGCAAGATAGG AAATGGCGCAGCTGCTGCTGCTGATGCTGCTGCATTGCCTCTCAAGGGGCCTGGATGGGAGGTGGTTATTCCGACGGCTACCGGAGGTGTGCTGTCCACT CTCAATAGTTAA
AA sequence Show only first row Show all	>Lus10041735 pacid=23146608 polypeptide=Lus10041735 locus=Lus10041735.g ID=Lus10041735.BGIv1.0 annot-version=v1.0 MSTSLQSVAGQASSNQPVSRNCERFLLCKASLTVLPVCMLGPDALIEEEIKNEAPADSPTSVLEDEDNGHNEMDVKSEEDPLLAVSIGDGSPISRAMAEE EEKLMNSREREEAKGNVKEEAPHLNDSQFNKLDELLTQTQLYSEFLLEKMDDITNNGEEQENETVGTKKGRGSKRKAGAGCNTRRAKRAVAAMITRSKEV ESADDANLSVEDKVEKEQRELVPLLTGGKLKAYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLANWMNEISRF APSLNAVIYHGDKKQRDEIRRKHMPKSIGSKFPIIITSYEVALFDAKRFLKHYTWKYVVVDEGHRLKNAKCKLVQHLKYLPMENKLLLTGTPLQNNLAEL WSLLNFILPDIFQSHEEFESWFDLSGKCNSKATVAELEEKRKSQVVAKLHAILRPFLLRRLKADVELLLPSKKEIILYATLTDYQKNFQEHLINRTLEKH LLDKVDLGRGMKVKLNNLMIQLRKNCNHPDLLESAFNGSYLYPPVEQIVEQCGKFQLLERLLKRLFEDKHKVLIFTQWTKILNIMDYYFCEKGFEVCRID GSVKLEDRRRQIAEFNDPDSTCRIFILSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRLLKRAFSKLKLEHV VIGKGQFHQERTKANPLADMEEEDILALLRDEESAEDKLIQTDVSDEDLERIMNRSDLINSPEGKIGNGAAAAADAAALPLKGPGWEVVIPTATGGVLST LNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	1.7	0.9596
AT5G01910			unknown protein		Lus10022734 [exp]	2.0	0.9535
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	3.9	0.9430
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	3.9	0.9556
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	4.6	0.9395
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10009836 [exp]	4.9	0.9477
AT5G48385			FRIGIDA-like protein (.1)		Lus10027765 [exp]	5.3	0.9316
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	5.5	0.9466
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	5.6	0.9289
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	5.7	0.9424

Compare expression of checked genes

Lus10041735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.