Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017075 [exp] 77 / 2e-18 ND / Lus10033089 [exp] 78 / 7e-17 ND / Lus10006097 [exp] 68 / 5e-14 AT4G29090 43 / 8e-05 Ribonuclease H-like superfamily protein (.1) Lus10033071 [exp] 68 / 2e-13 ND 39 / 0.005 Lus10010557 [exp] 53 / 2e-08 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10017303 [exp] 50 / 2e-08 ND / Lus10003990 [exp] 53 / 3e-08 AT1G01310 140 / 3e-40 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) Lus10042896 [exp] 47 / 2e-06 AT3G60380 91 / 1e-18 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041736 pacid=23146632 polypeptide=Lus10041736 locus=Lus10041736.g ID=Lus10041736.BGIv1.0 annot-version=v1.0 ATGAGTGATGTCCCCCAGGCCGAGCGGCCCGCTCACGATGATAGCAGACCTAAAGGCCAGCTGCCTGACTTGCAGGACCATCCGGTTTCGTTCTGGAGAA GGCTATGCTTTTCAGATAAGGCATCTGCAGTGAAGTTAGTGTTCTTTTGGTGGAGGCTCTGGAAGTCAAGCAATTTGGTAGTTTTCGAGCACTTTCAATT CTCAATTCCATCTCTTCCACGTCATTTTTTATCTCATTGGCTGGAAGGAACAAGGACTCAGGCGGCGGACTCAGGCTCTAGTTCGACGGCATCAAGGCTT CACTGTCCAACTGTTCCATCTCATGATTCGGCTTGGAGGATCTTCGTGGATGCAGCTGTTCGTCATGGTATTGATAACTCGGGATTTGGGGCTGTGGGTG TGGTTGTTCGGCGGCAGGATAATTCAGTAGCTTCAGCTATTGGACGTATCATCCACCATATCACAGATCCACTGGCACTTGAATTCCTTGCCATCCGCCA GGCTCTTTGGGCTGCTATGGGAAGACGACCCGATTCTATTTCTCTCTATTCAGACTAA
AA sequence Show only first row Show all	>Lus10041736 pacid=23146632 polypeptide=Lus10041736 locus=Lus10041736.g ID=Lus10041736.BGIv1.0 annot-version=v1.0 MSDVPQAERPAHDDSRPKGQLPDLQDHPVSFWRRLCFSDKASAVKLVFFWWRLWKSSNLVVFEHFQFSIPSLPRHFLSHWLEGTRTQAADSGSSSTASRL HCPTVPSHDSAWRIFVDAAVRHGIDNSGFGAVGVVVRRQDNSVASAIGRIIHHITDPLALEFLAIRQALWAAMGRRPDSISLYSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041736 [exp]	0	1
					Lus10017410 [exp]	1.0	0.9146
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	5.5	0.7373
AT5G03050			unknown protein		Lus10030557 [exp]	7.5	0.6767
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10037499 [exp]	8.5	0.6009
AT4G30590		AtENODL12	early nodulin-like protein 12 ...		Lus10019955 [exp]	9.2	0.6690
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	13.0	0.6631
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	16.4	0.6750
					Lus10007414 [exp]	18.7	0.6179
					Lus10042250 [exp]	22.6	0.5692
AT2G48140		EDA4	embryo sac development arrest ...		Lus10042613 [exp]	23.7	0.5948

Compare expression of checked genes

Lus10041736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.