Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 466 / 6e-164 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 195 / 4e-59 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G12740 176 / 2e-51 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT1G73340 174 / 2e-50 Cytochrome P450 superfamily protein (.1) AT4G36380 167 / 1e-47 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 163 / 3e-46 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G30180 157 / 3e-44 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 155 / 8e-44 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT5G14400 135 / 1e-36 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT3G19270 121 / 7e-31 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024016 [exp] 482 / 5e-171 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 216 / 3e-66 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 187 / 1e-55 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10014850 [exp] 181 / 6e-53 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 176 / 4e-51 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10017839 [exp] 167 / 1e-48 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10006152 [exp] 166 / 4e-48 AT3G13730 378 / 2e-128 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Lus10024495 [exp] 166 / 2e-47 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10031866 [exp] 165 / 5e-47 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026500 [exp] 488 / 1e-172 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 487 / 3e-172 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 231 / 1e-72 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 221 / 2e-68 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.008G067500 [exp] 212 / 5e-65 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 207 / 6e-63 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.017G154600 [exp] 180 / 1e-52 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.001G109100 [exp] 175 / 8e-51 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G122500 [exp] 175 / 9e-51 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.007G018400 [exp] 173 / 4e-50 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041737 pacid=23146715 polypeptide=Lus10041737 locus=Lus10041737.g ID=Lus10041737.BGIv1.0 annot-version=v1.0 ATGTCTGAGTCGGAGCTTCTTCTTATTGGACTATTCCTTCTCCCTTCCCTCTTCACTCTCCTTCTCATCCTAATCCTCAAAACCAAAAACCACCACCACC ACCGGTTCAATCTCCCTCCTGGGAGCTCCGGCTGGCCATTCATCGGCGAAACCATCGGCTACTTGCGCCCTTACACCGCTACTTCCATCGGCCATTTCAT GGAACGCCACGTCTCTAGGTACGGGAAGATATACCGGTCGAATTTGTTTGGGGAGCCGACGATAGTGTCAGCGGACGCCGGTCTGAACCGGTTTATTCTC CAGAACGAAGGGAGGCTGTTCGAGTGCAGCTACCCGAGGAGCATCGGCGGGATATTGGGGAAATGGTCGATGCTTGTTTTGGTTGGAGATATGCATCGTA ATATGAGAATCATATCCCTCAACTTCCTCAGCCATGCTAGGCTCCGTACGCATCTACTAAAAGAAGTTGAGCGCCACACTCTCCTTGTTCTCTCTTCCTG GAACCACAATTCCACTTTCTCCGCTCAGGACGAAGCCAAGAAGTTCACATTCAATCTAATGGCGAAGCATATCATGAGCTTGGATCCTGGGAAGCCAGAG ACAGAGCAGCTGAAATCAGAGTACATCACTTTCATGAAAGGAGTTGTTTCTCCTCCCCTGAATTTCCCTGGAACGGCTTACAGGCGAGCGTTGAAGTCAC GGTCGACGATTCTGAAGTTTATAGAGAGGAAAATGGAAGAGAGGAAAAAGAGGAGCAACGAGGTTGGAGAAGACGACGATCTTCTGGGATGGGTACTGAA GCATTCGAATCTATCGACGGAGCAAATACTTGACTTGGTTCTGAGCTTGCTCTTTGCTGGACACGAAACTTCCTCCGTCTCCATTGCTTTAGCTATTTAC TTCTTGCAGTCCTCCCCTGCCGCTCTTCAGCAATTACAGGCAAGTCATAAATTCAAAGCATAA
AA sequence Show only first row Show all	>Lus10041737 pacid=23146715 polypeptide=Lus10041737 locus=Lus10041737.g ID=Lus10041737.BGIv1.0 annot-version=v1.0 MSESELLLIGLFLLPSLFTLLLILILKTKNHHHHRFNLPPGSSGWPFIGETIGYLRPYTATSIGHFMERHVSRYGKIYRSNLFGEPTIVSADAGLNRFIL QNEGRLFECSYPRSIGGILGKWSMLVLVGDMHRNMRIISLNFLSHARLRTHLLKEVERHTLLVLSSWNHNSTFSAQDEAKKFTFNLMAKHIMSLDPGKPE TEQLKSEYITFMKGVVSPPLNFPGTAYRRALKSRSTILKFIERKMEERKKRSNEVGEDDDLLGWVLKHSNLSTEQILDLVLSLLFAGHETSSVSIALAIY FLQSSPAALQQLQASHKFKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041737 [exp]	0	1
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	1.4	0.7842
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	4.9	0.7690
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	5.2	0.8160
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	19.6	0.6874
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	29.7	0.7838
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	34.1	0.6776
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	34.9	0.7333
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10016254 [exp]	40.3	0.7667
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	54.3	0.7256
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	66.0	0.6741

Compare expression of checked genes

Lus10041737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.