Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 226 / 1e-72 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 141 / 2e-41 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 141 / 3e-40 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G48000 133 / 2e-37 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT3G13730 132 / 6e-37 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G73340 130 / 5e-36 Cytochrome P450 superfamily protein (.1) AT1G55940 124 / 9e-34 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G44970 123 / 1e-33 Cytochrome P450 superfamily protein (.1) AT1G78490 119 / 4e-32 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT2G29090 115 / 6e-31 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024016 [exp] 289 / 7e-98 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 149 / 3e-43 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10022298 [exp] 142 / 1e-42 AT5G14400 282 / 3e-94 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10028297 [exp] 142 / 3e-42 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 144 / 1e-41 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10003650 [exp] 142 / 8e-41 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10030404 [exp] 134 / 1e-38 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 132 / 5e-37 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10031295 [exp] 128 / 3e-35 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124000 [exp] 249 / 1e-81 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 243 / 3e-79 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 165 / 2e-49 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.014G171700 [exp] 164 / 5e-49 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 139 / 8e-40 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 139 / 1e-39 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G018400 [exp] 134 / 1e-37 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.003G038200 [exp] 128 / 2e-35 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.009G143600 [exp] 127 / 3e-35 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 126 / 6e-35 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041738 pacid=23147072 polypeptide=Lus10041738 locus=Lus10041738.g ID=Lus10041738.BGIv1.0 annot-version=v1.0 ATGGAGTTCACCCAATGCGTTATCAGTGAGACGCTGAGACTTGGGAACGTGGTGAGGTTTCTACACAGGAAGGCTTTGAAGGACGTCCGGTACAAAGGGT ATGACATTCCATGTGGATGGAAAGTGCTGCCGGTGATAGCAGCCGTGCACTTGGACGGTACCGTTTTCGGCGACCCTCAATCCTTCAACCCATGGCGGTG GCTCCAGACCATCAACGGCCGAGGATCTTCCACCACGTTGTCTCCGGCATCGAGCAGCAGCAACACCTTCATGCCGTTCGGGGGAGGGCCGCGGCTGTGT GCGGGGTCGGAGTTGGCAAAGCTAGAAATGGCGGTTTTCATACACCATCTGGTACTGAACTACGAGTGGGAGTTGGCTGAAGATGATCAAGCATTTGCTT TCCCATACCTCGACTTCCCCAAAGGTTTACCTATTAGAGTCAAGCGTCGAGACATCACATGA
AA sequence Show only first row Show all	>Lus10041738 pacid=23147072 polypeptide=Lus10041738 locus=Lus10041738.g ID=Lus10041738.BGIv1.0 annot-version=v1.0 MEFTQCVISETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDGTVFGDPQSFNPWRWLQTINGRGSSTTLSPASSSSNTFMPFGGGPRLC AGSELAKLEMAVFIHHLVLNYEWELAEDDQAFAFPYLDFPKGLPIRVKRRDIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041738 [exp]	0	1
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10041737 [exp]	1.4	0.7842
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	8.9	0.7401
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	13.4	0.7059
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	15.2	0.7078
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	17.5	0.7262
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	21.8	0.7203
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	26.7	0.7036
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10021966 [exp]	34.0	0.6157
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10007855 [exp]	42.1	0.6696
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10005477 [exp]	44.0	0.6033

Compare expression of checked genes

Lus10041738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.