Plant FIBer expression Database

Lus10041739 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66760 1110 / 0 SDH1-1 succinate dehydrogenase 1-1 (.1)
AT2G18450 1070 / 0 SDH1-2 succinate dehydrogenase 1-2 (.1)
AT5G14760 238 / 8e-70 AO L-aspartate oxidase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024015
[exp]
1119 / 0 AT5G66760 1103 / 0.0 succinate dehydrogenase 1-1 (.1)
Lus10014539
[exp]
239 / 7e-70 AT5G14760 994 / 0.0 L-aspartate oxidase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G026400
[exp]
1133 / 0 AT5G66760 1180 / 0.0 succinate dehydrogenase 1-1 (.1)
Potri.005G123900
[exp]
1125 / 0 AT5G66760 1136 / 0.0 succinate dehydrogenase 1-1 (.1)
Potri.001G348600
[exp]
241 / 1e-70 AT5G14760 996 / 0.0 L-aspartate oxidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02910 Succ_DH_flav_C Fumarate reductase flavoprotein C-term
CL0063 NADP_Rossmann PF00890 FAD_binding_2 FAD binding domain
Representative CDS sequence
>Lus10041739 pacid=23146975 polypeptide=Lus10041739 locus=Lus10041739.g ID=Lus10041739.BGIv1.0 annot-version=v1.0
ATGTGGCGGTGTGTCGCTCGCGGCCTTCGCGTTCCTTCTTCTTCTTCTTCTAAGCGATCCGTCCCAAACGACTCGATCAGATCTCACATTACCAGATTCT
TCTCTACCAGCCCGACTGCTTCATATACAATTGTCGATCATACCTATGACGCGGTTGTGGTAGGAGCTGGTGGCGCTGGGTTGAGAGCTGCCATAGGTCT
TTCAGAGCATGGATTTAACACAGCTTGCATCACCAAACTTTTCCCCACCCGTTCACACACAGTTGCAGCACAGGGTGGTATCAATGCTGCTCTGGGAAAT
ATGTCCGAAGATGACTGGAGATGGCACATGTATGACACTGTCAAGGGTAGCGATTGGTTAGGTGATCAAGATGCCATCCAATACATGTGTAGGGAAGCAC
CAAAGGCTGTAATTGAACTTGAGAACTATGGGTTACCATTCTCTCGTACAGAGGATGGAAAGATCTATCAACGAGCATTTGGTGGTCAAAGTCTTGATTT
TGGAAAAGGTGGACAAGCATACCGTTGTGCATGTGCTGCTGACAGAACTGGACATGCCCTGCTGCATACTCTATATGGCCAAGCAATGAAACACAACACT
CAATTTTTTGTGGAATATTTTGCTTTGGACTTGTTGATGAACAGCGACGGAAGCTGTCAGGGGGTGATTGCCCTTAATATGGAAGATGGAACATTGCATC
GGTTCCGTTCTGCTTCAACAATTCTAGCCACAGGGGGCTATGGTAGGGCATACTTCTCGGCGACCTCAGCTCATACATGCACGGGAGATGGCAATGCCAT
GGTTGCGAGAGCTGGACTCCCTCTTGAGGATCTGGAGTTCGTTCAATTTCACCCTACAGGCATTTATGGAGCTGGATGCCTCATTACTGAAGGATCTCGC
GGTGAAGGTGGTATTCTCAGAAATAGTGAAGGGGAACGGTTCATGGAAAGATATGCCCCTACAGCTAAGGATCTTGCTTCAAGAGATGTTGTTTCAAGAT
CCATGACCATGGAAATCCGGGAGGGTCGTGGTGTAGGACCAATGAAGGACCATATATATCTGCATCTAAATCATTTGCCTCCAGAAGTACTGAAGGAGAG
GCTTCCCGGCATCTCTGAAACTGCTGCTATTTTTGCTGGTGTAGATGTTACAAAGGAACCTATCCCTGTCCTACCTACTGTCCATTATAATATGGGTGGA
ATTCCCACAAATTATCATGGAGAGGTAGTTACTATTAAAGGCAATGATCCAGATACTGTAATTCCTGGATTAATGGCTGCTGGAGAGGCAGCTTGTGCGT
CAGTTCATGGAGCTAACCGTCTGGGAGCAAATTCTCTTCTTGATATTGTTGTTTTTGGCCGTGCATGGGAGAAACAGAAGCCTTTGGAAGCAGATGCTGG
AGAGAAGACTGTTGCATGGCTGGACAAGATAAGAAATTCAAATGGATCACTCCCAACTTCCCAAATTCGGTTAAATATGCAGAGAGTAATGCAAAATAAT
GCTGCAGTCTTCCGTACACAGGAAACTTTGGAAGAAGGTTGCCAGCTGATTGACAAAACTTGGGAAAGCTTCCATGACGTTCAGTTGAAAGACAGGAGTT
TGATATGGAACTCCGACTTGATTGAGACGATTGAATTGGAAAACCTGCTAATAAATGCATGCGTCACAATGCATTCTGCTGAAGCTCGTAAAGAGAGCAG
AGGTGCACATGCCCGCGAGGACTTCACCACAAGAGACGATGAGAAGTGGATGAAGCATACTTTAGGATATTGGGAAAACGAGAAGGTCCGGCTGGATTAC
AGGCCAGTCCATATGAACACATTGGATGACGAGGTTGACACCTTCCCTCCTAAAGCTCGTGTGTACTGA
AA sequence
>Lus10041739 pacid=23146975 polypeptide=Lus10041739 locus=Lus10041739.g ID=Lus10041739.BGIv1.0 annot-version=v1.0
MWRCVARGLRVPSSSSSKRSVPNDSIRSHITRFFSTSPTASYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN
MSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT
QFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFRSASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSR
GEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPMKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGG
IPTNYHGEVVTIKGNDPDTVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAWEKQKPLEADAGEKTVAWLDKIRNSNGSLPTSQIRLNMQRVMQNN
AAVFRTQETLEEGCQLIDKTWESFHDVQLKDRSLIWNSDLIETIELENLLINACVTMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGYWENEKVRLDY
RPVHMNTLDDEVDTFPPKARVY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66760 SDH1-1 succinate dehydrogenase 1-1 (.... Lus10041739
[exp]
0 1
AT3G02090 MPPBETA Insulinase (Peptidase family M... Lus10040885
[exp]
2.4 0.9378
AT5G40810 Cytochrome C1 family (.1.2) Lus10022327
[exp]
4.0 0.9102
AT1G15130 Endosomal targeting BRO1-like ... Lus10035265
[exp]
7.7 0.9024
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10035118
[exp]
8.0 0.9246
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10026519
[exp]
10.8 0.9200
AT3G05530 ATS6A.2, RPT5A regulatory particle triple-A A... Lus10031492
[exp]
12.0 0.9080
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10023192
[exp]
14.1 0.9115
AT2G05710 ACO3 aconitase 3 (.1) Lus10027165
[exp]
14.7 0.9111
AT3G52990 Pyruvate kinase family protein... Lus10035581
[exp]
15.3 0.9145
AT3G02090 MPPBETA Insulinase (Peptidase family M... Lus10004938
[exp]
16.0 0.9196

Lus10041739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.