Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66780 48 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024013 [exp] 135 / 1e-41 AT5G66780 64 / 3e-14 unknown protein Lus10026022 [exp] 65 / 1e-13 AT5G66780 111 / 1e-32 unknown protein Lus10014313 [exp] 55 / 4e-10 AT5G66780 77 / 2e-19 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041741 pacid=23146869 polypeptide=Lus10041741 locus=Lus10041741.g ID=Lus10041741.BGIv1.0 annot-version=v1.0 ATGAATCAGGCATCGAGATCTTTGAGAAGGGTGGTTTCAGGGGGTGTTAGTTTAAGGAGGAGGGTGAATACCCATAGCAGCGATCCGGGGAGTATGCACA ACATGGACAAAGCTGAGCATCCCAAGGAAAACAAAGGAAACGCGATCTCGAATCAACCTGGAGATGGGTACGCGACGAGGAGCGATGAGGCTGGATTTGG CGCTGGGAAATTTGGAGGAAATGCAGAGGACAATATCAAGTTGGACCAGCAGTTCAACAAAGATCACCCTGGTTACGACAAGAGCCAGGGAAAGGAATCG AACAAAAAGGACAAGTCTGTTATATGTGCGGCAAAATCTTACACAGATGATAAAATGAAACCCCAGTCCTTACACCAGAGCACTGCCTTTTGCCCCTGTC CTCATTTCTTTGACACAGGCCGAAGGTCTTTTCCCCGCTTCATCCGAAGTCCTTTCCCATGGCTTGGCTTTGGAAGCTGTAGTTTAAAAGTCTAG
AA sequence Show only first row Show all	>Lus10041741 pacid=23146869 polypeptide=Lus10041741 locus=Lus10041741.g ID=Lus10041741.BGIv1.0 annot-version=v1.0 MNQASRSLRRVVSGGVSLRRRVNTHSSDPGSMHNMDKAEHPKENKGNAISNQPGDGYATRSDEAGFGAGKFGGNAEDNIKLDQQFNKDHPGYDKSQGKES NKKDKSVICAAKSYTDDKMKPQSLHQSTAFCPCPHFFDTGRRSFPRFIRSPFPWLGFGSCSLKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66780			unknown protein		Lus10041741 [exp]	0	1
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	2.4	0.7977
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	4.6	0.7610
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10013084 [exp]	6.7	0.7863
					Lus10041400 [exp]	11.6	0.7733
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10008894 [exp]	11.7	0.8138
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	17.5	0.7615
					Lus10040835 [exp]	18.4	0.7334
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	29.2	0.6978
AT5G23070			Thymidine kinase (.1)		Lus10016925 [exp]	29.6	0.6976
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	31.4	0.6957

Compare expression of checked genes

Lus10041741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.