Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50860 278 / 5e-97 Clathrin adaptor complex small chain family protein (.1) AT2G17380 102 / 6e-28 AP19 associated protein 19 (.1) AT4G35410 100 / 3e-27 Clathrin adaptor complex small chain family protein (.1.2) AT1G47830 93 / 2e-24 SNARE-like superfamily protein (.1) AT2G19790 92 / 7e-24 SNARE-like superfamily protein (.1) AT4G08520 40 / 0.0003 SNARE-like superfamily protein (.1) AT3G09800 39 / 0.0007 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024011 [exp] 241 / 3e-82 AT3G50860 215 / 3e-72 Clathrin adaptor complex small chain family protein (.1) Lus10042352 [exp] 102 / 3e-27 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10026316 [exp] 100 / 1e-26 AT2G17380 297 / 7e-105 associated protein 19 (.1) Lus10003641 [exp] 95 / 6e-25 AT4G35410 251 / 8e-87 Clathrin adaptor complex small chain family protein (.1.2) Lus10024337 [exp] 93 / 2e-23 AT1G47830 274 / 5e-95 SNARE-like superfamily protein (.1) Lus10012924 [exp] 87 / 6e-22 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10035004 [exp] 84 / 8e-21 AT2G19790 262 / 6e-92 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122900 [exp] 287 / 1e-100 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1) Potri.007G025400 [exp] 285 / 8e-100 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.012G052000 [exp] 100 / 5e-27 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 100 / 5e-27 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.002G001800 [exp] 100 / 7e-27 AT2G17380 278 / 3e-97 associated protein 19 (.1) Potri.005G238701 [exp] 96 / 2e-25 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.002G022900 [exp] 95 / 4e-25 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.006G149100 [exp] 90 / 5e-23 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10041742 pacid=23146742 polypeptide=Lus10041742 locus=Lus10041742.g ID=Lus10041742.BGIv1.0 annot-version=v1.0 ATGATAAAAGCGGTGATGGTGATGAACACTCAAGGCAAGCCTCGGCTCACGAAATTCTACGATTTTATGTTCCGTTTTTCTGACGATCTCGCTTCCTCAA TCGAATTCTGGTGCGGACAGCCTGTGGAGAAGCAGCAGGAGATTATTCGGACTGTGTTTGGAGTTCTGTGCAGTAGAGCCGATAATGTTAGCAATTTCAT GGATGCGGATTCCATTTTCGGCCCGGATAGTCGTCTTGTGTACAAGCACTTCGCAACTCTCTACTTCGTCTTTGTGTTCGATAGTTCAGAAAACGAGCTT GCCATGCTTGATCTCATCCAAGTTTTCGTGGAAACATTAGACAAATGCTTCAGAAATGTGTGTGAGCTTGATATAGTGTTCAATTATAGCAAGCTGCATA CCATATTAGATGAGATAATCTTTGGAGGCCAAGTGCTGGAGACGAGTTCTGCTGAGGTCATGAAGGTAGTTGAAGAGATATCAAGGCAAGAATCAGCGGC AAATTCTATAGGATTAGTCACCAAAACAGTTTCAGGCTGGAGGAGGTAG
AA sequence Show only first row Show all	>Lus10041742 pacid=23146742 polypeptide=Lus10041742 locus=Lus10041742.g ID=Lus10041742.BGIv1.0 annot-version=v1.0 MIKAVMVMNTQGKPRLTKFYDFMFRFSDDLASSIEFWCGQPVEKQQEIIRTVFGVLCSRADNVSNFMDADSIFGPDSRLVYKHFATLYFVFVFDSSENEL AMLDLIQVFVETLDKCFRNVCELDIVFNYSKLHTILDEIIFGGQVLETSSAEVMKVVEEISRQESAANSIGLVTKTVSGWRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	0	1
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	1.4	0.7897
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	1.4	0.7953
AT5G42470			unknown protein		Lus10033139 [exp]	3.9	0.7809
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	4.1	0.7230
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	8.7	0.7672
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Lus10021609 [exp]	10.2	0.7523
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	11.1	0.7760
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	17.8	0.6279
AT3G07820			Pectin lyase-like superfamily ...		Lus10002931 [exp]	18.2	0.6625
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	24.3	0.7498

Compare expression of checked genes

Lus10041742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.