Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49555 890 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G06820 79 / 4e-15 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 53 / 3e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014308 [exp] 803 / 0 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 713 / 0 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10026016 [exp] 584 / 0 AT5G49555 494 / 2e-171 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10029347 [exp] 77 / 1e-14 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10016199 [exp] 73 / 3e-13 AT1G06820 912 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 47 / 4e-05 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G025300 [exp] 956 / 0 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.016G066000 [exp] 74 / 8e-14 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 74 / 1e-13 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 57 / 2e-08 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10041743 pacid=23146636 polypeptide=Lus10041743 locus=Lus10041743.g ID=Lus10041743.BGIv1.0 annot-version=v1.0 ATGTGGCGACGGAGATTTAGCACTGGACCAGCCGCCGCTTCCTTGGAACTGGCAGGCAAGAAATGGGACGCATTAGTGATCGGCGGCGGCCACAACGGCT TGACCGCCNNNTTGACCGCCGCTGCCTACCTTGCTCGAGCTGGCCTCTCTGTCGCCGTCTTAGAGCGCCGTCACGTGATCGGCGGCGCCGCCGTAACGGA AGAGATCGTTCCTGGATTTAAGTTCTCTCGCTGCAGTTACTTGCAGAGCCTCCTCCGCCCTTCCGTAATCAAAGAGTTGGAATTGAAGAGACATGGTTTG AAGTTACTGAGGAGAAGCCCGTCGTCGTTCACGCCTTGTTTGGATGGACGCTATCTTCTACTGGGGCCTGATCAGGAGCTTAATCGCTCTGAAATCTCCA AGTTCTCTAAACGCGACGCCGAAGCTTATCCCAGGTACGAGAGGCAACTTGAGAGATTCTGTAAAGTCATGGATCCTCTTTTGGATGCACCTCCTCCAGA AACTCTGCAGAATGCTTCATCATTTGCAGATCGGTGGAAGGATAAACTGCAGAAATCAGTTTTCTGGGCTCGTTTTCTACGGACAGGTCTCTCATTAGGG CAGAAGGATTTGGTGGATTTCATGGACCTTCTGTTGTCACCGTCTTCAAAAGTTTTGAATAACTGGTTTGAGGCAGATGTGCTGAAGGCGACCTTGGGAA CTGATGCTATTATAGGTACTACGGGTAGCGTACATACACCGGGAAGTGGATATGTTCTGCTACATCATGTGATGGGAGAGACTGACGGGGATCGTGGAAT TTGGTCTTATGTTGAAGGAGGAATGGGCTCAGTATCACTGGCTATTAGTAATGCTGCTAAGGAAGCTGGGGCACATATATTGACAAGTGCAGAGGTTTCA CAAGTGATTATCAAGGACTCTGGTGGAGCTAGTGGGGTGGTGCTGGCTGATGGTACCGAAATCACCTCTTCGGTAGTTCTCTCAAATGCTACGCCTTACA AGACTTTCATGGAATTAGTGCCCCACAATGTTCTTTCAGATGAATTTACCCTTAGCGTGAAGCATTCTGACTATAGTTCTGCAACTACAAAAATAAACCT GGCCGTCGATAAGCTGCCCGATTTTCAATCTTGCAAGTTGAGCCATCCTGATGCCGGGCCTCAGCATATGGGCACTATTCATATTGGTTCAGAGAGCATG GAAGAAATTGATTCAGCCTGCCAGGACGCTGTAAATGGAGTACCGTCCAGAAGACCAGTTATCGAGATGACAATTCCTTCTGTCCTCGACAAGACTATTT CTCCTCCTGGTAAACATGTGATCAACTTGTTTGTACAGTACACTCCTTACAAGCCATCAGATGGGAGCTGGTCGGATCCTGCTTACCGGGAATCGTTCGC ACAAAGGTGCTTCAGCTTGATTGATGAATTCGCACCTGGCTTTAGCTCTTCAATAATTGGCTACGACATGCTGACACCACCTGACCTCGAAAGAGAAATT GGTTTGACAGGAGGTAACATATTCCACGGCGCGATGGGGTTGGATTCCCTATTCCTTATGCGACCAGTAAAAGGATGGTCGAGTTACAGAACTCCTGTGG AAGGGTTGTACCTTTGCGGCAGTGGCACTCACCCAGGAGGTGGCGTGATGGGCGCACCTGGACGTAATGCTGCAACTGTGGTTCTTCAGGACATCAAGAA GACCCCATGA
AA sequence Show only first row Show all	>Lus10041743 pacid=23146636 polypeptide=Lus10041743 locus=Lus10041743.g ID=Lus10041743.BGIv1.0 annot-version=v1.0 MWRRRFSTGPAAASLELAGKKWDALVIGGGHNGLTAXLTAAAYLARAGLSVAVLERRHVIGGAAVTEEIVPGFKFSRCSYLQSLLRPSVIKELELKRHGL KLLRRSPSSFTPCLDGRYLLLGPDQELNRSEISKFSKRDAEAYPRYERQLERFCKVMDPLLDAPPPETLQNASSFADRWKDKLQKSVFWARFLRTGLSLG QKDLVDFMDLLLSPSSKVLNNWFEADVLKATLGTDAIIGTTGSVHTPGSGYVLLHHVMGETDGDRGIWSYVEGGMGSVSLAISNAAKEAGAHILTSAEVS QVIIKDSGGASGVVLADGTEITSSVVLSNATPYKTFMELVPHNVLSDEFTLSVKHSDYSSATTKINLAVDKLPDFQSCKLSHPDAGPQHMGTIHIGSESM EEIDSACQDAVNGVPSRRPVIEMTIPSVLDKTISPPGKHVINLFVQYTPYKPSDGSWSDPAYRESFAQRCFSLIDEFAPGFSSSIIGYDMLTPPDLEREI GLTGGNIFHGAMGLDSLFLMRPVKGWSSYRTPVEGLYLCGSGTHPGGGVMGAPGRNAATVVLQDIKKTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	0	1
AT1G48170			unknown protein		Lus10011844 [exp]	1.7	0.8643
AT1G23220			Dynein light chain type 1 fami...		Lus10031734 [exp]	8.2	0.8377
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10023872 [exp]	10.2	0.8492
AT5G08450			unknown protein		Lus10004299 [exp]	12.0	0.8375
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10007088 [exp]	15.7	0.8768
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	19.1	0.8699
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	19.2	0.8345
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	29.7	0.8575
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	29.9	0.8600
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	41.4	0.8110

Compare expression of checked genes

Lus10041743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.