Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36570 52 / 3e-11 MYB ATRL3 RAD-like 3 (.1) AT4G39250 53 / 4e-11 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT1G75250 51 / 2e-10 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT2G21650 51 / 3e-10 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT1G19510 46 / 2e-08 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT5G05790 47 / 8e-08 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 46 / 9e-08 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 46 / 9e-08 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT3G11280 45 / 2e-07 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT2G18328 44 / 2e-07 MYB ATRL4 RAD-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024009 [exp] 87 / 9e-24 AT1G75250 82 / 6e-21 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10014307 [exp] 68 / 5e-17 AT4G39250 82 / 5e-22 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10007152 [exp] 61 / 5e-14 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10002538 [exp] 58 / 4e-13 AT1G75250 112 / 1e-33 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10041752 [exp] 57 / 7e-13 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 57 / 2e-12 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10014301 [exp] 57 / 2e-12 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10026009 [exp] 56 / 2e-12 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10028306 [exp] 55 / 5e-12 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122200 [exp] 62 / 1e-14 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G023800 [exp] 59 / 8e-14 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155866 [exp] 59 / 2e-13 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 58 / 5e-13 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 58 / 5e-13 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.002G035000 [exp] 57 / 1e-12 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.001G248800 [exp] 57 / 1e-11 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.004G155400 [exp] 51 / 2e-10 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 50 / 5e-10 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025200 [exp] 50 / 6e-10 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041744 pacid=23147085 polypeptide=Lus10041744 locus=Lus10041744.g ID=Lus10041744.BGIv1.0 annot-version=v1.0 ATGGGAGCAGAAGAAGAAGTAGTGTGTTCTTGGACTCCGAAGATGAACAAGCTGTTCGAGGTTGCCCTGGCCATGTACGATGAGGATACCCCTGATCGTT GGGAGGTCATAGCTGATATTGTCGGCGGTATGGGAAACAGGTTGAAGGAACTGGAGCTGGATTGGGTAGCTTAG
AA sequence Show only first row Show all	>Lus10041744 pacid=23147085 polypeptide=Lus10041744 locus=Lus10041744.g ID=Lus10041744.BGIv1.0 annot-version=v1.0 MGAEEEVVCSWTPKMNKLFEVALAMYDEDTPDRWEVIADIVGGMGNRLKELELDWVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10041744 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	7.3	0.8716
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	10.6	0.8616
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	10.9	0.8405
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	15.6	0.8519
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	15.6	0.8497
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	18.6	0.8454
					Lus10007508 [exp]	20.8	0.8427
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	22.4	0.8427
AT1G04670			unknown protein		Lus10004041 [exp]	24.0	0.8427
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	24.5	0.8342

Compare expression of checked genes

Lus10041744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.