Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50870 61 / 2e-10 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) AT4G36620 52 / 7e-08 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028301 [exp] 95 / 0.001 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024500 [exp] 80 / 2e-17 AT3G50870 202 / 5e-64 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.005G122700 [exp] 79 / 7e-17 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041746 pacid=23146968 polypeptide=Lus10041746 locus=Lus10041746.g ID=Lus10041746.BGIv1.0 annot-version=v1.0 ATGATGCATCGGTGCAGCAGCGGCGGCGTGGGAGGTCAGTGTTTATGCGGAATGGCATACCATTGCGGCGGCGGCTCCTCCGTGTTTTTTAATTCCGACC CTCCTCCTCTTCCTGATCATTCATACACCAACAACTACTCCTCTTACCACCAAACTAATAATTACTACAATTCCTGCCCTTCCCCTTCCTCCTCCGTCGA CTGTACCCTCTCCCTCGGAACCCCTTCCACTCGTTTGATCGCCGCCGATGACGACCACAACAACAACCGTACATCCTCCTCCAAAAACAACAACCGCCGC TCTTCCGGTCACTACGTCGCAAACTTTTTCTGGGATTTTGCTGGGACATCCTCAAAGGCGGCTCCTCCAATAATAATAAGTCAAACTCCCGTGGACCGGC CCACAACAATAATAATGATCCGACATTGCTGGCCCGTCGATGCGCCAACTGCGACACCACCTCCACCCCTCTCTGGCGCAACGGCCCCCGTGGCCCCAAG AGGAGAGGAGAGCAAGTGCAGCTGCTGCCGGTGCTTCATCCCGCGGCGCAATGGGAGATCCGACATATTATGTGGAATTCGGTTCAAGAAAGAGGAGAGG AGAGCAAGTGCAGCTGCTGCCGGTTCATCATCCGGTCCAGCAATGGAACATCAGCAGTATTATGGATACGGCGGCGCGACATCATCATCATCGTCGAGCA AGATGGGGTGTTACTCCCCGGCGGGGGAGTTCAGGTTCATTGATCACGACAGTAACGATTACGATCATCATCATCATCAAGTGATGTCCGATCAGACAGC AGGAATTCCGGGCTTCCTCTCGTGGAGATTGAACATCACCGATAGACCCGCCCTCGTCCACGACTTCACCAGATAG
AA sequence Show only first row Show all	>Lus10041746 pacid=23146968 polypeptide=Lus10041746 locus=Lus10041746.g ID=Lus10041746.BGIv1.0 annot-version=v1.0 MMHRCSSGGVGGQCLCGMAYHCGGGSSVFFNSDPPPLPDHSYTNNYSSYHQTNNYYNSCPSPSSSVDCTLSLGTPSTRLIAADDDHNNNRTSSSKNNNRR SSGHYVANFFWDFAGTSSKAAPPIIISQTPVDRPTTIIMIRHCWPVDAPTATPPPPLSGATAPVAPRGEESKCSCCRCFIPRRNGRSDILCGIRFKKEER RASAAAAGSSSGPAMEHQQYYGYGGATSSSSSSKMGCYSPAGEFRFIDHDSNDYDHHHHQVMSDQTAGIPGFLSWRLNITDRPALVHDFTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10041746 [exp]	0	1
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	1.0	0.9495
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	5.5	0.9273
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	7.5	0.9040
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	8.4	0.9009
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10029071 [exp]	9.5	0.8871
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	10.7	0.9086
AT1G01730			unknown protein		Lus10030384 [exp]	11.0	0.8426
AT5G06790			unknown protein		Lus10023815 [exp]	12.6	0.8223
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	15.0	0.8785
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	17.0	0.8829

Compare expression of checked genes

Lus10041746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.