Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18360 429 / 6e-152 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 416 / 4e-147 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 184 / 6e-56 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 162 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 162 / 2e-47 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 158 / 6e-46 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 143 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 136 / 3e-37 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 134 / 2e-36 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 55 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028302 [exp] 238 / 3e-78 AT2G18360 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 235 / 5e-76 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 175 / 1e-52 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 155 / 8e-45 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 154 / 3e-44 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 152 / 2e-43 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 145 / 4e-41 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 141 / 2e-39 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 132 / 5e-36 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024400 [exp] 465 / 2e-166 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 465 / 2e-166 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 343 / 4e-118 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116900 [exp] 330 / 2e-113 AT2G18360 324 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 325 / 3e-111 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G116800 [exp] 318 / 3e-108 AT2G18360 316 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 310 / 2e-105 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 309 / 7e-105 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 172 / 2e-51 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 160 / 1e-46 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041747 pacid=23146828 polypeptide=Lus10041747 locus=Lus10041747.g ID=Lus10041747.BGIv1.0 annot-version=v1.0 ATGGTGAACCTAGTGGCAGCACAAAAGCCATTGGTAAACTTCATGATGAAAATGGCCGGTATCAAAACCCACACCGTCGAAATCCAGCCAGGCACCCACA TGAACTTCTGGGTTCCCATCGAAACCCTCCCCACCAAAAACGATAAAAGAAACAATAAGGACGGCGGCGGCAACTCAACCAAACCTCCGAGAAAACCGGT GGTGGTCCTGGTCCACGGCTTCGCAGGGGAAGGAATAGTGACGTGGCAGTTCCAGGTTGGCGCGCTGACCAAGAACTACTCGGTCTACGTGCCGGACCTG ATCTTCTTCGGCGGCTCGGTGTCGGACAGCTCTGACCGGTCCCCGAGGTTCCAGGCGGAGACGCTGGCGAAGGGGCTGAGGAAGCTAGGGGTGGACACGT GTATGGTGGTCGGGTTCAGTTACGGCGGGATGGTGGCGTTCAAGATGGCCGAGATGTACCCAGAGATGGTTCGTGGGTTGGTGGTTTCCGGTTCGATTCT GGCCATGACCGATTCGATAAGCGTGGAGACTCTGGGTAGGATTGGGTTCAAGTCCTCCTCGGAGCTTCTGTTGCCTACCTCTGTTAAGGGCTTGAAAGCT CTGCTCTCTGTTGCTACTTACAAGAATCTTTGGTTCCCCGAACGCCTTCACAGGGACTTCCTCGAGGTGATGTTCAGCAACAGGAAGGAAAGAGAGGAGC TTCTGGAAGGACTGGTGATAAGCAACCAAGACACTACCATTCCTAAATTTCAACAGAGGATACATCTGTTGTGGGGGGAGAATGATCAAATCTTCCAGCT AGACCTTGCTCACAACATGAAACAGCAATTGGGAGAGAAGGCAACAGTGGAAAGCATAAGCAAAGCAGGGCATTTGGTTCACCTGGAACGTCCCTGCGCC TACAACAAATGTCTCCAAAAAATACTCGCAACTCTACACTCTGAGATCCACAGCAACACCAAGTAA
AA sequence Show only first row Show all	>Lus10041747 pacid=23146828 polypeptide=Lus10041747 locus=Lus10041747.g ID=Lus10041747.BGIv1.0 annot-version=v1.0 MVNLVAAQKPLVNFMMKMAGIKTHTVEIQPGTHMNFWVPIETLPTKNDKRNNKDGGGNSTKPPRKPVVVLVHGFAGEGIVTWQFQVGALTKNYSVYVPDL IFFGGSVSDSSDRSPRFQAETLAKGLRKLGVDTCMVVGFSYGGMVAFKMAEMYPEMVRGLVVSGSILAMTDSISVETLGRIGFKSSSELLLPTSVKGLKA LLSVATYKNLWFPERLHRDFLEVMFSNRKEREELLEGLVISNQDTTIPKFQQRIHLLWGENDQIFQLDLAHNMKQQLGEKATVESISKAGHLVHLERPCA YNKCLQKILATLHSEIHSNTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	0	1
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	1.4	0.9715
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	1.7	0.9718
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	2.8	0.9666
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	3.0	0.9678
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	4.5	0.9548
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10010575 [exp]	4.9	0.9570
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	5.0	0.9661
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006909 [exp]	5.8	0.9338
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	6.0	0.9654
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Lus10001971 [exp]	6.5	0.9286

Compare expression of checked genes

Lus10041747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.