Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50880 291 / 2e-98 DNA glycosylase superfamily protein (.1) AT1G19480 283 / 9e-94 DNA glycosylase superfamily protein (.1.2) AT1G75230 281 / 7e-93 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010824 [exp] 272 / 2e-89 AT1G19480 417 / 2e-145 DNA glycosylase superfamily protein (.1.2) Lus10033215 [exp] 272 / 3e-89 AT1G75230 416 / 3e-144 DNA glycosylase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024200 [exp] 315 / 7e-108 AT3G50880 293 / 1e-99 DNA glycosylase superfamily protein (.1) Potri.002G035300 [exp] 273 / 4e-90 AT1G19480 360 / 8e-123 DNA glycosylase superfamily protein (.1.2) Potri.005G227700 [exp] 272 / 4e-89 AT1G75230 385 / 3e-132 DNA glycosylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10041749 pacid=23146928 polypeptide=Lus10041749 locus=Lus10041749.g ID=Lus10041749.BGIv1.0 annot-version=v1.0 ATGGGCAAACCGATAACCCGATCCATCGCTCTGTCTCTAAGCGACTCGCCCTCTGCTTCTCAGGCCGCCGCCGCCGCTCACCTCTCTCCGTCTTCGTCCA AACTCCCTTTCCGGCCCCGGAAGATACGTAAAATCACTGCCGGTATAAAAGACGCCGCCTTGATATCAACCACGGCCACCGTCACTCTCACCCCCACCAC CTCCTCCCCCGCCCCAACCGACATCAAATTCAACCCCTTATCAGCGGAAGGCGAAATCGACGCCGCCCTGAACCACCTCCGCAGTTCAGATCGACTCCTA GCAACCCTAATCGACTCCAACACCCGCCCAAACTTCGAATCTAGCAAGCCGCCATTCATCTCCTTAGCCAGAAGCATCATCTTCCAACAGCTAGCCACAA ACGCAGCCCGATCAATCTACACGCGGTTCCTCAATCTCTGCGGCGGCGAAGAAAAGATCCAACCCGACGCCGTACTGGCGCTCTCGGCGTTACAGCTGAG AGAAATCGGGGTCTCGGGACGCAAGGCGAGTTACCTCCACGACCTAGCGGGGAAGTTCAGGGACGGATCGCTGTCCGATTCTGGGATCCTGGAGATGGGA GAGGAGGAGATGGTGGAGAGATTGACGGCGGTGAAAGGGATCGGGGTGTGGTCGGTCCATATGTTCATGATATTCTCGTTGCATAAGCCGGACGTATTGC CGGTGGGGGATTTGGGGGTGAGGAAAGGAGTGCAGGGGTTGTACGGGCTGAAGGGGTTGCCGGAGGCGGCGGAGATGGAGAAGGTTTGCGAGAAGTGGAG GCCTTACAGGTCGGTTGGGGCATGGTATATGTGGAGATTGGTGGAAGCCAAGGCCGCTGCTGGGAAAGCAGGAAAGAAGGTTAAGATTAAGAAAGTTGTT GTCACTGCTGCTGATGCCACTGCTAGCAACGTTTAA
AA sequence Show only first row Show all	>Lus10041749 pacid=23146928 polypeptide=Lus10041749 locus=Lus10041749.g ID=Lus10041749.BGIv1.0 annot-version=v1.0 MGKPITRSIALSLSDSPSASQAAAAAHLSPSSSKLPFRPRKIRKITAGIKDAALISTTATVTLTPTTSSPAPTDIKFNPLSAEGEIDAALNHLRSSDRLL ATLIDSNTRPNFESSKPPFISLARSIIFQQLATNAARSIYTRFLNLCGGEEKIQPDAVLALSALQLREIGVSGRKASYLHDLAGKFRDGSLSDSGILEMG EEEMVERLTAVKGIGVWSVHMFMIFSLHKPDVLPVGDLGVRKGVQGLYGLKGLPEAAEMEKVCEKWRPYRSVGAWYMWRLVEAKAAAGKAGKKVKIKKVV VTAADATASNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50880			DNA glycosylase superfamily pr...		Lus10041749 [exp]	0	1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	8.5	0.8809
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10039685 [exp]	12.0	0.8323
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	13.0	0.8385
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	21.8	0.8699
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10004574 [exp]	22.4	0.8280
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	23.9	0.8540
AT5G17380			Thiamine pyrophosphate depende...		Lus10028503 [exp]	31.0	0.7833
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	35.4	0.8409
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	35.8	0.8487
AT3G19990			unknown protein		Lus10017359 [exp]	51.5	0.7999

Compare expression of checked genes

Lus10041749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.