Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44310 42 / 0.0005 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) AT4G21020 41 / 0.0008 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028304 [exp] 439 / 2e-154 AT5G44310 62 / 1e-10 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041750 pacid=23146933 polypeptide=Lus10041750 locus=Lus10041750.g ID=Lus10041750.BGIv1.0 annot-version=v1.0 ATGGCGATGACGATGAAGGTCCGAGACAGAGGGTTATTAGTGACGATGATGATGGCGGTGGTGGTATGCCTTTCGTTGACGGCTGAGGTTTGCCATGCGT GGGGGAGCGACAGCGACGGGCCCGGGATATGGGACAAGACAAAGGAGACGGTGAGTCAGGCAGCCGGTTCAGTCAAGGAGAAGACCGGCGAGGTCGTGGA GGGCGCTCAGGGCTGGGCTAACAAACACATCTCATCGACAATGAATTTGGGAGCGGAGACTGCCGAAAGTGTTGGCGCCGCCGGGGGAGACAAGGCACAA GGTGCCAAGGAGATTTACGGAGATGTCAGTGAAAAGGCCTATCACGCCGGCGGCAAAGTCGGTTCCGCCGCAAGGGACATGGCAGAAGATACCAAGAGAA CGATGTCTGACTTGGGCGCCGCCGGTAAAGAAAAGGCTGGGGATGCGAAGGAGAAGATCAAGAACGTCGCCGGCGAAGTTGGGGCCACTGGCAGAGACAA GGCAGAGGATGCCACAGCGAAGTTGTCCGTCATGGGCGCCGCCGGTAGGGACAAGGCAGAGGATGCAAAAGAGAAGGTGAAGCACGTCGCCGGCGAAGTT GGTGCCTCCGGCAGAGACAAGGCAGAGGATGCAAAAGAGAAAGTCAAACACGTCGCCGGTGAAGTTGGTGCCGCCGGTAGAGACAAGGCAGAGGATGCAA AAGCGAAGTTGTCTGCCATGGGCGCCGCCGGCAGGGAGAAGGCAGAAGATGCGAAGGAGAAGGTGAAGCAAGTCCCCGGCGATGTCAGAGACAAGGCAGA GGAAGCAAAGGAAAAGGCCAAGAATGTGGCAGGGGATGTTGGCGCGGCCGGCAATAATAAGGCAGAAGATGGGAAGGAGAAGGTGACACAGGCGGCCGCA GATGCGCGTGCCCACGGCGGGGGGAAGGCGGAAGGTGCCAAGGACATTTATGGGAAAGTGAAGGAGAAGCTGTCGCAAGCGACTGGCATCGGCGCCAAGT CGAAGGATGAGAAGGGTGGCGAGCTTTAA
AA sequence Show only first row Show all	>Lus10041750 pacid=23146933 polypeptide=Lus10041750 locus=Lus10041750.g ID=Lus10041750.BGIv1.0 annot-version=v1.0 MAMTMKVRDRGLLVTMMMAVVVCLSLTAEVCHAWGSDSDGPGIWDKTKETVSQAAGSVKEKTGEVVEGAQGWANKHISSTMNLGAETAESVGAAGGDKAQ GAKEIYGDVSEKAYHAGGKVGSAARDMAEDTKRTMSDLGAAGKEKAGDAKEKIKNVAGEVGATGRDKAEDATAKLSVMGAAGRDKAEDAKEKVKHVAGEV GASGRDKAEDAKEKVKHVAGEVGAAGRDKAEDAKAKLSAMGAAGREKAEDAKEKVKQVPGDVRDKAEEAKEKAKNVAGDVGAAGNNKAEDGKEKVTQAAA DARAHGGGKAEGAKDIYGKVKEKLSQATGIGAKSKDEKGGEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72100			late embryogenesis abundant do...		Lus10041750 [exp]	0	1
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	3.7	0.8068
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10019017 [exp]	17.6	0.7623
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	21.4	0.7678
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	31.9	0.7491
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	33.8	0.7278
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	34.4	0.7170
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	40.4	0.7196
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	50.7	0.7253
AT3G19910			RING/U-box superfamily protein...		Lus10018140 [exp]	52.6	0.7192
AT1G58330		ZW2	transcription factor-related (...		Lus10025265 [exp]	58.5	0.6872

Compare expression of checked genes

Lus10041750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.