Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36550 378 / 8e-121 ARM repeat superfamily protein (.1) AT1G67530 174 / 1e-45 ARM repeat superfamily protein (.1.2) AT1G24330 163 / 7e-42 ARM repeat superfamily protein (.1) AT1G27910 143 / 2e-35 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT5G42340 116 / 7e-27 PUB15 Plant U-Box 15 (.1) AT3G46510 115 / 2e-26 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G67340 112 / 2e-25 ARM repeat superfamily protein (.1) AT1G23030 100 / 6e-22 PUB11 ARM repeat superfamily protein (.1) AT1G71020 97 / 4e-21 ARM repeat superfamily protein (.1.2) AT3G07360 97 / 6e-21 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028307 [exp] 1259 / 0 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10015801 [exp] 164 / 4e-42 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 159 / 2e-40 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 158 / 4e-40 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 158 / 5e-40 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10016016 [exp] 110 / 6e-25 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 98 / 6e-21 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10007317 [exp] 98 / 6e-21 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10043471 [exp] 97 / 2e-20 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122100 [exp] 665 / 0 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 626 / 0 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G228100 [exp] 409 / 3e-132 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.010G058000 [exp] 164 / 3e-42 AT1G24330 1079 / 0.0 ARM repeat superfamily protein (.1) Potri.008G177100 [exp] 157 / 9e-40 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 115 / 2e-26 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 113 / 9e-26 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.011G071400 [exp] 111 / 5e-25 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.019G029500 [exp] 100 / 6e-22 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 99 / 2e-21 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10041754 pacid=23146629 polypeptide=Lus10041754 locus=Lus10041754.g ID=Lus10041754.BGIv1.0 annot-version=v1.0 ATGGGATCTGATGCCGCGGAGGAAGTGGAGATTCCTCTTCATTTGTATTCTTTCAAGGTGTATCATTCGATGTGTGGTCAGCTGATGAAGTTGGTTGAAA GGATTAAACAAATGTTTCCTCGGATAGAAGAGTCTCGTCCTCGATGCTCATCTGGGATAGACGCACTGGTCTCATTAAGCAATGCCCTTGAGCGTGCTAA GCAACTTCTTCAGTATTGCTCGGAGTCAAGCAAACTTTACTTGGTAATCACTGGAGAAGCAACAGTTGCAAGATTTTTAAGATCAAGGAAGCTGATGGTG CAAAGTTTGAGTCAGATCCACACAATGGTTCTTGGGAGCTTGGCTGCTGAGATTTCGCCAATTATAGATGATCTCGAGGATGCAAACTTTGTAATGGAGA CCTCCGAAGAGGAGGCTGGAAAGGTACTGCTTGAATTGCTTCATCATGGAACTGATTCAGCAGAATCTCAAATGAGAGCTTTTCAAGTTGCTCTCTCAAA GCTTCACATTATCTCCCAGAGGGACGTAGTAATAGAGGGGAGATCTATCAAGAAGTTACTTGATAAAGTTGGTAACAACAACCAAAACAAAACAAAGATC TTGAAGATCCTTTTCTATCTCTTAAAGAAGTACAAAAACTCGATCCCGGTGAACCATAGAAGTTCTTCAAATGATGATCATGATGCTTCAGCGAACGATC AATCAAGTGAAGCCAGGCCTAATTTGTTAAGTCATGCTGCACCACTGGAAGAGTTCAGGTGTCCTATATCGAGGAGAGTGATGTATGACCCTGTCATCAT TGCTTCTGGACAAACTTATGAAAGAAAGTGGATACAGAAATGGTTTAATGATGGTAACAGCACGTGTCCCAAGACAAAACTGAAGCTGGAGAACTATTCA GTCGTTCCAAACACTGCTTTGAAAGACCTTATATCAAAGTGGTGTATGGACTACGGGATCAGCATTGGTGAACCAGTGACAGAACCGTTGAAGTCGCTGG ATCTATCATCTGATTCCATTGCTAGCTTAGGCAGTGATATGAATGATCTCCAATTTCATCTGGACATCAGCAGTGTATCATTAGGATCTATGGAAGCTAG TTACTGTTCCAATGTCTCTAGCACTAAGGTTGTAGAAGGTTCAAGGTTGAAGGTGATGGCTGGACACAAGACGTGCGAATGTAATGCAAACGTGTACGAG AATGACATGGAGTTACTATCTCGACTCTCAGAGCTTCCTTGGGAGTCTCAATGCACCGTTATTTGTGACATAAATAGTCACTTGAAATGTGATTGCCAAG CTTGGGATTCAGAGTCATCAGGAAAGTTTATTGAACCTCTGGTTCTACATTTGAGAGATGCACTTGACCAGTTTGATCTAGGAGCCCAGAAGGCTGGATC TAGATTGTTGCTTGCACTACTGAATAAGACTGGAAGTGACGTATCATGCTTAAATGAAGATGCCTACAGTTTGCTGGCATCATTCTTGGAGTCTGAAACA CTCGATTCTTCTATTGCGATTTTGGATGCCTTGTCCGCCAAGCCAAACTGCAGATCCAGAATCGCAGCATCCGAGGCGCCAGTTTCTCTCTTAAAGATTT TGGACCGGGTAGAGAGCAAGGAAATGCAGGAACGTGTCGTCAGGATCTTTTACAACTTGTCATCAAGCAGTGATGTCTGCCCCAAGTTGGCATCTCTGGG ATGCATTCCAAAGCTGGTTCCTTTCATTAACGACAGCAATGTTACGAGATACTGCATCGTTCTACTGAAGAATCTGTGTGACACGGTGGGTCAGGCTCGG GTTAGCATTGCTGAGACCAATGGCTGCATCTCTTCGATCGCTCAACTGCTGGAGAATGGCAGTGCCGAGGAGCAAGAGCATGCAGTAACTGTCTTGGTTT CTCTATGTGCTCAGCGAGATCAGTACTGCCTTTTGCTGATGGATGAAGGTGTTATTCCTTCCCTCTGTAGCATCTCGGTGAACGGGAATGAGAAAGCGAA AGCAAGTGCGTTGGAACTGCTCCGACAGTTGAGAAATGTCGAGTATGAATCCGAGCCGGAAAGAAGTCCTCCTCCTCGTCCTCTTCCTCCTCGACTTAGC GTCGTCTGTGATGAGGATGTTGTTGTTCCTCAAGATAAAGTAAAGAAGTCTGGATTTCTGAAGAATATAGCAGGCTCTCTTGCTTCCAGAAGGAAGAGAT AA
AA sequence Show only first row Show all	>Lus10041754 pacid=23146629 polypeptide=Lus10041754 locus=Lus10041754.g ID=Lus10041754.BGIv1.0 annot-version=v1.0 MGSDAAEEVEIPLHLYSFKVYHSMCGQLMKLVERIKQMFPRIEESRPRCSSGIDALVSLSNALERAKQLLQYCSESSKLYLVITGEATVARFLRSRKLMV QSLSQIHTMVLGSLAAEISPIIDDLEDANFVMETSEEEAGKVLLELLHHGTDSAESQMRAFQVALSKLHIISQRDVVIEGRSIKKLLDKVGNNNQNKTKI LKILFYLLKKYKNSIPVNHRSSSNDDHDASANDQSSEARPNLLSHAAPLEEFRCPISRRVMYDPVIIASGQTYERKWIQKWFNDGNSTCPKTKLKLENYS VVPNTALKDLISKWCMDYGISIGEPVTEPLKSLDLSSDSIASLGSDMNDLQFHLDISSVSLGSMEASYCSNVSSTKVVEGSRLKVMAGHKTCECNANVYE NDMELLSRLSELPWESQCTVICDINSHLKCDCQAWDSESSGKFIEPLVLHLRDALDQFDLGAQKAGSRLLLALLNKTGSDVSCLNEDAYSLLASFLESET LDSSIAILDALSAKPNCRSRIAASEAPVSLLKILDRVESKEMQERVVRIFYNLSSSSDVCPKLASLGCIPKLVPFINDSNVTRYCIVLLKNLCDTVGQAR VSIAETNGCISSIAQLLENGSAEEQEHAVTVLVSLCAQRDQYCLLLMDEGVIPSLCSISVNGNEKAKASALELLRQLRNVEYESEPERSPPPRPLPPRLS VVCDEDVVVPQDKVKKSGFLKNIAGSLASRRKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	1.0	0.8691
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	4.9	0.8422
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	6.3	0.8213
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	8.0	0.8492
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	10.2	0.8233
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	10.5	0.8189
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	11.4	0.7915
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	13.0	0.7933
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	13.7	0.8405
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	15.3	0.8325

Compare expression of checked genes

Lus10041754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.