Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18290 346 / 2e-123 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028308 [exp] 394 / 4e-142 AT2G18290 343 / 4e-122 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121700 [exp] 350 / 4e-125 AT2G18290 318 / 2e-112 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1) Potri.007G023500 [exp] 343 / 4e-122 AT2G18290 314 / 9e-111 EMBRYO DEFECTIVE 2783, anaphase promoting complex 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF03256 [flax] [poplar] ANAPC10 Anaphase-promoting complex, subunit 10 (APC10)
Representative CDS sequence Show only first row Show all	>Lus10041756 pacid=23146724 polypeptide=Lus10041756 locus=Lus10041756.g ID=Lus10041756.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGTCATCGGAGGGGGAAGAGGAAGGGAAAATCACCGGAGGTAGTCAGCATCTGCTAGTGGACGATGACCTCAGAGAACTGGGTAAAAAGG CTGCTTGGAGCGTCAGCTCTTGTAAAACCGGCAATGGCGTCTCTTCTCTCCGCGACGACAATCTCGACACCTACTGGCAATCGGATGGTGCTCAGCCACA TTTGGTGAACATTCAATTCCAGAAGAAAGTAAAGCTTCAATTGGTTTCAGTTTATGTTGATTTCAAGCTTGATGAGAGCTATACTCCCAGCAAGATCTCC ATTCGTGCTGGTGATGGATTCCATAACCTGAAGGACATCAAAACTGTGGAATTTGTCAAGCCTACTGGTTGGGTTTGCATTTCCCTATCTGGAAATGATC CTAGGGAAACCTTCGTGAACACGTTTATGTTACAAATTGCGGTGCTCTCAAATCACCTGAATGGAAGAGATACTCATATCCGCCAGATTAAAGTCTATGG ACCTCGGCCGAACCCTATTCCGCATCAACCATTTCAGTTCACTTCTACAGAGTTCATCACTTACTCTACTGTCAGATGA
AA sequence Show only first row Show all	>Lus10041756 pacid=23146724 polypeptide=Lus10041756 locus=Lus10041756.g ID=Lus10041756.BGIv1.0 annot-version=v1.0 MATESSEGEEEGKITGGSQHLLVDDDLRELGKKAAWSVSSCKTGNGVSSLRDDNLDTYWQSDGAQPHLVNIQFQKKVKLQLVSVYVDFKLDESYTPSKIS IRAGDGFHNLKDIKTVEFVKPTGWVCISLSGNDPRETFVNTFMLQIAVLSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSTEFITYSTVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Lus10041756 [exp]	0	1
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	11.0	0.8472
AT3G01435			Expressed protein (.1)		Lus10022634 [exp]	11.5	0.8207
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	20.6	0.8315
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10029818 [exp]	21.9	0.8222
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	22.4	0.8272
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10011877 [exp]	26.1	0.8245
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	28.8	0.8286
AT5G26800			unknown protein		Lus10015444 [exp]	29.1	0.8275
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	31.9	0.8259
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028160 [exp]	40.1	0.8212

Compare expression of checked genes

Lus10041756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.