Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18280 472 / 2e-166 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 419 / 4e-145 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G47900 385 / 5e-132 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G25280 385 / 3e-131 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 379 / 7e-129 TUB AtTLP1 tubby like protein 1 (.1.2) AT3G06380 343 / 7e-116 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 342 / 1e-114 TUB AtTLP5 tubby like protein 5 (.1) AT5G18680 333 / 7e-112 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 307 / 8e-102 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 80 / 5e-17 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028309 [exp] 808 / 0 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10014299 [exp] 668 / 0 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10026007 [exp] 664 / 0 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10033209 [exp] 459 / 7e-161 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10010833 [exp] 452 / 3e-158 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10010645 [exp] 450 / 3e-157 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10033208 [exp] 446 / 5e-156 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10018884 [exp] 383 / 1e-130 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10028579 [exp] 383 / 2e-130 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G023400 [exp] 580 / 0 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 571 / 0 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 463 / 2e-162 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G228500 [exp] 452 / 4e-158 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G192300 [exp] 396 / 5e-136 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 395 / 1e-135 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 390 / 2e-133 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 381 / 2e-130 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 377 / 1e-128 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 311 / 2e-103 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10041757 pacid=23146687 polypeptide=Lus10041757 locus=Lus10041757.g ID=Lus10041757.BGIv1.0 annot-version=v1.0 ATGTCTTTCAAAAGCATTTTCCGTGAGCTGAAGGAGATGAAAGATGGGGTTGGGAGTAGGTCTACCCGAGGGGTCGAAGGAGGTAAGCGGTGGCGGGGCA GCCGGGCAAGGTCACATATAGCACCTGATGAAACGTCAATGGCTGAGGCTGCACGATCTTCTCAGCAAGGCCAGTGGGCGGATTTGCCCACAGAGCTGCT TTTCGACATCATCAGCAGGGTGGAAGAGACTGAGACCTCATGGCCTGGTCGTGCTGCGGTCGTTCATTGCGCTTCCGTTTGTAAGTCCTGGAGAGAAGTA ACCAGGGAGATTGTGCAAACTCCTGAACAGTGTGGGAGGTTCACATTCCCTATATCATTGAAGCAGCCCGGTCCTCGCGAGTCTCCAATACACTGCTACA TAAGAAGAGATCCTGCTACTTCCACTTTCCGGTTGTATGCTGGATTGATGCCTTCTGCGGGGCAGAATGACAAATTGCTTTTAGCTGCAAAAAGAATCAG AAGGACAACTTGCACGGATTTCATAATATCTTTGGTTGGAAATGATTTTTCCCGATCCAGCAACAACTACGTTGGTAGACTCAGGTCTAACTTTATGGGA ACCAAGTTCACCATATCAGATAGGTTATCTTCACATGAGCTTCCAACACATTTGACCAGTGGGGCAAGTCGTAGAGTCCATTCCAGACAGTCGAGGACTT CTGCATTAAACTACAACATAGGCACGATCAATTACGAGCTGAATGTGCTCCGCACGAGAGGGCCAAGGAGAATGCATTGTGTCCTTAATTCTATTCCAGT CTCCTCTATGGAAGAAGGAGGGAGCGTCCCAACAATGACATCATTGCCAGAGGTAACCGGCGAGCAGTTTTCTCCTTCACCGGCTCCTAAAGGAAGGAGA CCGGCCTCAGACGTAAGTTCCACTAGCCCGTCAGAGTCACCGATGGTAATCCCTGGCTCGGGGGAGCCCCTAGTTCTGAAAAATCGGTCTCCTAGATGGC ACGAGCAGCTCCAATGTTGGTGCTTAAATTTCAAGGGGCGTGTTACCGTTGCTTCCGTTAAGAACTTCCAACTCTCTGCTACATTCGAACCCCACCACTG TGTGTCGGCTGAAGAACAAGATAGGGTGCTCCTACAATTTGGGAAAATTGGGAAAGACATGTTCACCATGGATTACAGCTACCCGCTGTCTGCATTTCAA GCGTTTGCTCTTTGCCTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA
AA sequence Show only first row Show all	>Lus10041757 pacid=23146687 polypeptide=Lus10041757 locus=Lus10041757.g ID=Lus10041757.BGIv1.0 annot-version=v1.0 MSFKSIFRELKEMKDGVGSRSTRGVEGGKRWRGSRARSHIAPDETSMAEAARSSQQGQWADLPTELLFDIISRVEETETSWPGRAAVVHCASVCKSWREV TREIVQTPEQCGRFTFPISLKQPGPRESPIHCYIRRDPATSTFRLYAGLMPSAGQNDKLLLAAKRIRRTTCTDFIISLVGNDFSRSSNNYVGRLRSNFMG TKFTISDRLSSHELPTHLTSGASRRVHSRQSRTSALNYNIGTINYELNVLRTRGPRRMHCVLNSIPVSSMEEGGSVPTMTSLPEVTGEQFSPSPAPKGRR PASDVSSTSPSESPMVIPGSGEPLVLKNRSPRWHEQLQCWCLNFKGRVTVASVKNFQLSATFEPHHCVSAEEQDRVLLQFGKIGKDMFTMDYSYPLSAFQ AFALCLSSFDTKPACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10041757 [exp]	0	1
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10017681 [exp]	8.7	0.7740
AT5G50175			unknown protein		Lus10043318 [exp]	21.0	0.7501
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	27.6	0.6999
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10021745 [exp]	27.7	0.7305
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	48.5	0.6954
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	56.8	0.6590
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	140.9	0.5993
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	143.1	0.6260
AT3G58670			Protein of unknown function (D...		Lus10029828 [exp]	152.4	0.6140
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10023998 [exp]	163.8	0.6061

Compare expression of checked genes

Lus10041757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.