Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18250 229 / 1e-77 ATCOAD 4-phosphopantetheine adenylyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028311 [exp] 290 / 1e-101 AT2G18250 265 / 1e-91 4-phosphopantetheine adenylyltransferase (.1) Lus10026004 [exp] 249 / 2e-85 AT2G18250 267 / 2e-92 4-phosphopantetheine adenylyltransferase (.1) Lus10014296 [exp] 229 / 3e-77 AT2G18250 249 / 5e-85 4-phosphopantetheine adenylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121200 [exp] 222 / 7e-75 AT2G18250 268 / 6e-93 4-phosphopantetheine adenylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10041759 pacid=23146877 polypeptide=Lus10041759 locus=Lus10041759.g ID=Lus10041759.BGIv1.0 annot-version=v1.0 ATGGCAGCTGAGGATGAAACGGCGATCAACTACAAGATTTCCCCGCCAAACACGTACGGATCCGTGGTGCTCGGCGGCACGTTTGATCGGCTTCACGACG GCCATCGCCTTTTCCTCAAGGCAGCAGCCGAGCTGGCTAAGGAAAGGGTTGTTGTTGGAGTTTGCCACGGCCCTATGCTCGCCAAAAAACAGTTTGCAGA CCTGATACAGCCTGTTGATCAAAGGATGCAGAATGTTGAAATCTTCATCAAGTCTATCAAGCCAGAGCTCCTGGTGCAAGCTGAACCAATCATTGATCCC TATGGACCTTCAATTGTCCTCCAAGATTTGGAAGCTATAGTCGTTAGCAAAGAGACTGTACCAGGCGGCCTGGCAGTTAACAGGAAGAGAGCTGAGAAAG GACTTTCGCAGCTCAAGATTGAAGTTGTGGATCTAATTTCTGACGGATCCAGTGGAGAGAAGCTGAGTTCCTCAACTTTGAGGCAACTCGATGCCGAGAA GGCTAAACAACAAGCAACATAG
AA sequence Show only first row Show all	>Lus10041759 pacid=23146877 polypeptide=Lus10041759 locus=Lus10041759.g ID=Lus10041759.BGIv1.0 annot-version=v1.0 MAAEDETAINYKISPPNTYGSVVLGGTFDRLHDGHRLFLKAAAELAKERVVVGVCHGPMLAKKQFADLIQPVDQRMQNVEIFIKSIKPELLVQAEPIIDP YGPSIVLQDLEAIVVSKETVPGGLAVNRKRAEKGLSQLKIEVVDLISDGSSGEKLSSSTLRQLDAEKAKQQAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10041759 [exp]	0	1
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	4.1	0.8859
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	9.0	0.8624
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	11.8	0.8558
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	12.0	0.8651
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	12.2	0.8557
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	14.3	0.8207
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	14.8	0.8563
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	15.0	0.8518
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	17.5	0.8496
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	18.1	0.8540

Compare expression of checked genes

Lus10041759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.