Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12920 782 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT3G26618 778 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT5G47880 748 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028312 [exp] 877 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 870 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 870 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10014295 [exp] 830 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 827 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10042947 [exp] 791 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10032447 [exp] 790 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10028313 [exp] 201 / 3e-63 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 166 / 5e-48 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 795 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 789 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 788 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10041760 pacid=23146739 polypeptide=Lus10041760 locus=Lus10041760.g ID=Lus10041760.BGIv1.0 annot-version=v1.0 ATGGCAGACAGCGAGGACAAGAACATTGAGATTTGGAAGATAAAGAAGCTTATAAAGTCACTGGAAGCTGCTCGAGGCAATGGAACGAGCATGATTTCCC TCGTCATACCTCCTCGTGATCAGATATCACGTATTGCAAAGATGCTCGGTGATGAGTATGGAACTGCTTCGAATATTAAGAGCAGGGTCAATCGTCAGTC TGTACTTGGTGCTATCACATCTGCTCAGCAGAGGCTTAAGCTCTACAACAGGGTTCCTACAAATGGCCTTGTGTTGTACACTGGGACTATTTTGACTGAT GATGGAAAGGAAAAGAAAGTGACTATGGACTTTGAGCCTTTTAAACCAATTAACTCATCTCTCTACCTTTGCGACAACAAGTTCCATACTGAAGCATTGA ATGAACTGTTGGAGTCTGATGACAAGTTTGGTTTCATCGTCATGGATGGTAATGGCACCTTGTTTGGAACACTAAGTGGGAACACCAGGGAAATTCTGCA TAAGTTCTCGGTTGACTTGCCTAAGAAGCATGGAAGAGGAGGACAGTCAGCGCTTCGTTTTGCTAGACTCCGAATGGAGAAGCGCCACAATTATGTGAGG AAGACGGCTGAACTTGCTACGCAGTTTTACATAGACCCATCCACCAGCCAGCCAAATGTATCTGGCCTAATTCTTGCTGGATCTGCTGACTTTAAGACTG AGCTAGGTCAGTCTGATATGTTTGATGCTAGACTTGGAGCAAAGATTCTGAATGTTGTGGATGTGTCCTATGGCGGAGAAAACGGATTTAATCAGGCAAT CGAGCTTTCTTCTGAGATTTTGTCCAATGTGAAGTTTATCCAGGAGAAGAAGCTGATAGGAAAGTACTTTGAAGAGATCAGTCAAGATACCGGAAAATAT GTATTTGGTGTCGATGATACATTGACAACTTTGGATATGGGTGCAGTCGAGATTCTCATAGTGTGGGAGAATCTAGAGATCAACAGGTATGAATTGAAGA ACAGTGCCAACGGTGAGATTGTAGTCAAACATTTTACCAAAGAGCAAGAGACCAATGAAAGCAACTTTAGGGATTCATCCACTTCAGCTGAACTGGAGGT TCAAGACAAGATGCCTCTGCTCGAGTGGTTTGCTAATGAGTACAAGCGATTTGGGTGCACTCTTGGGTTTTTAAATAAAAAAACAAAGGACAAATCACAG GAAGGGTCCCAATTCTGCAGGGGGTTTGGTGGTATTGGTGGCATTCTGCGTTACCAAGTTGACATGAGATCGTTTGATGATGTTTCTGATGATGAGGGAG GAGTTTATGATTCGGAATAG
AA sequence Show only first row Show all	>Lus10041760 pacid=23146739 polypeptide=Lus10041760 locus=Lus10041760.g ID=Lus10041760.BGIv1.0 annot-version=v1.0 MADSEDKNIEIWKIKKLIKSLEAARGNGTSMISLVIPPRDQISRIAKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPTNGLVLYTGTILTD DGKEKKVTMDFEPFKPINSSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREILHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVR KTAELATQFYIDPSTSQPNVSGLILAGSADFKTELGQSDMFDARLGAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKKLIGKYFEEISQDTGKY VFGVDDTLTTLDMGAVEILIVWENLEINRYELKNSANGEIVVKHFTKEQETNESNFRDSSTSAELEVQDKMPLLEWFANEYKRFGCTLGFLNKKTKDKSQ EGSQFCRGFGGIGGILRYQVDMRSFDDVSDDEGGVYDSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	0	1
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	6.3	0.7332
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	6.6	0.7143
					Lus10019815 [exp]	7.6	0.7340
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	16.1	0.7011
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	21.8	0.6957
AT1G11050			Protein kinase superfamily pro...		Lus10028552 [exp]	22.8	0.6292
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	25.0	0.6658
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	26.0	0.7324
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	27.4	0.6726
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	28.5	0.6843

Compare expression of checked genes

Lus10041760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.