Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36530 479 / 7e-171 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 151 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 134 / 7e-36 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25290 134 / 3e-34 DNA photolyases;DNA photolyases (.1) AT5G13800 116 / 1e-28 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT1G13820 61 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 60 / 8e-10 alpha/beta-Hydrolases superfamily protein (.1) AT3G10840 57 / 7e-09 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 52 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 51 / 5e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028315 [exp] 631 / 0 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 159 / 1e-42 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10003969 [exp] 143 / 3e-39 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031137 [exp] 142 / 4e-37 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10005320 [exp] 126 / 1e-32 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10019755 [exp] 124 / 2e-31 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10031716 [exp] 102 / 2e-23 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10016369 [exp] 77 / 4e-15 AT5G13800 483 / 2e-168 Co-regulated with NYE1, pheophytinase (.1.2) Lus10016051 [exp] 68 / 6e-12 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121000 [exp] 542 / 0 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 148 / 4e-41 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 142 / 9e-39 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G054800 [exp] 125 / 9e-32 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.015G129500 [exp] 124 / 5e-31 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.010G158800 [exp] 76 / 3e-15 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 55 / 2e-08 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 54 / 5e-08 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 54 / 9e-08 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G175700 [exp] 54 / 1e-07 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041763 pacid=23147003 polypeptide=Lus10041763 locus=Lus10041763.g ID=Lus10041763.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCATGTGCAGCTGTATCGTCGTCCGTAAGGTCAGAGCTATTCAACTCCAGAGCTACCCGATTAGTCGCGCCAGCGAGGCTGAACCCTAGCA GAGTTGAGAGATTGCCCTTCAAGCCAGAAGGCTACAACTTTTGGACATGGAAAGGTCACAGGATACATTATGTTGTTGAAGGGGAAGGTCCTCCTATTGT TCTAGTTCATGGCTTTGGTGCTTCTGCTTTCCACTGGAGATACAATATACCTGAGTTGGCGAAGAAGTACAAGGTTTACGCCATAGACTTGCTAGGTTTC GGATGGAGTGAGAAAGCACTAGTTGACTACGATGCCATGATATGGAAGGATCAATTAGTGGATTTCATGAAGCAGATAGTGAAAGAGCCAGCAGTTTTAG TGGGAAACAGGTACTCTCTTGTTACAGTAGGTTCTCCAGTCTCCACTATAGAGTTTGGCGAAAAGATGTCGATTCAAATCAAGCTCATCCTTACCTTTTT CAGCCTTGGAGGATTCACTGCTTTGATTTCCGCAGTGGGGTTACCTGAACAAGTTATTGGAGTTGTACTGCTTAATTCAGCTGGCCAGTTTGGAAATCCA AATGCGGAAACCAAGGAGTCTGAAGAATCTTCACTACAGAAGTATCTTCTGAAACCAGTCAAGGAAGTGTTTCAACGCGTTGTACTAGGCTTTTTGTTCT GGCAAGCAAAGCAACCGGCTCGTGTGGAGTCTGTCTTAAAGAGTGTTTATGCAAACAAATCCAATGTGGATGACTATCTTGTTAAATCAATCATCCAACC AGCAGCAGATCCAAATGCCGGCGAAGTATATTACAGATTAATGTCGCGATTCATGGTAAACCAAACGACCTACACATTGGACAGTGCGTTGAGTAAACTC AGATGTCCGCTTCTGTTGATATGGGGGGACTTGGACCCATGGGTTGGTCCTGCAAAGGCAAGAAGAATCAAGGAGTTCTATCCAAATACAACAGTAGTGA ACTTGCAGGCCGGTCATTGCCCCCATGACGAAGTTCCCGAGCTTGTTAATAAAGCTTTAATGGACTGGCTACCTTCTCTAAAACCAGAACCCTCTCTCCA GACAATGTAA
AA sequence Show only first row Show all	>Lus10041763 pacid=23147003 polypeptide=Lus10041763 locus=Lus10041763.g ID=Lus10041763.BGIv1.0 annot-version=v1.0 MSSSCAAVSSSVRSELFNSRATRLVAPARLNPSRVERLPFKPEGYNFWTWKGHRIHYVVEGEGPPIVLVHGFGASAFHWRYNIPELAKKYKVYAIDLLGF GWSEKALVDYDAMIWKDQLVDFMKQIVKEPAVLVGNRYSLVTVGSPVSTIEFGEKMSIQIKLILTFFSLGGFTALISAVGLPEQVIGVVLLNSAGQFGNP NAETKESEESSLQKYLLKPVKEVFQRVVLGFLFWQAKQPARVESVLKSVYANKSNVDDYLVKSIIQPAADPNAGEVYYRLMSRFMVNQTTYTLDSALSKL RCPLLLIWGDLDPWVGPAKARRIKEFYPNTTVVNLQAGHCPHDEVPELVNKALMDWLPSLKPEPSLQTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	0	1
AT1G28140			unknown protein		Lus10034291 [exp]	1.4	0.9424
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10028315 [exp]	4.8	0.8827
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	5.5	0.9226
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	5.7	0.9309
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	7.7	0.9309
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	8.5	0.9266
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	12.8	0.8656
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	13.0	0.9224
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	14.0	0.8980
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	15.2	0.9178

Compare expression of checked genes

Lus10041763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.