Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27740 246 / 2e-75 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G21690 72 / 2e-13 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 59 / 6e-09 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G77470 57 / 2e-08 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028316 [exp] 838 / 0 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10019391 [exp] 241 / 1e-73 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 196 / 8e-56 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10023809 [exp] 122 / 2e-31 AT5G27740 138 / 2e-39 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10025689 [exp] 74 / 8e-14 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 67 / 1e-11 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 66 / 2e-11 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10023810 [exp] 64 / 4e-11 AT5G27740 72 / 1e-14 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10024504 [exp] 61 / 9e-10 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120901 [exp] 620 / 0 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.007G022900 [exp] 607 / 0 AT5G27740 261 / 2e-82 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.019G040000 [exp] 225 / 2e-67 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.003G093400 [exp] 143 / 1e-36 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G181300 [exp] 74 / 7e-14 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 72 / 2e-13 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 61 / 7e-10 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.007G022950 [exp] 48 / 1e-05 ND / Potri.002G080100 [exp] 46 / 6e-05 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10041764 pacid=23146604 polypeptide=Lus10041764 locus=Lus10041764.g ID=Lus10041764.BGIv1.0 annot-version=v1.0 ATGGACCTGGACAGCAACTATTTCCCTACCTTGAACCGAACCAGGAGCGGCTACGAGCCATCCGATGTCGAAACCGATTGGAAAGAAAGCCCGTTCCGTG GCAACAACAACAACATCAACAACAACTACAGAGCAGGTTTTGACTCAGACATTGACTTGGATTTACCAGCTGGAAAAAACCCTCCAGCTTCCAACAGACA ATTCAGGAGATTTGATGCGACTGATGATTTATCTTCTTCCTCTGAAGGAGGAGCTTCAATCTCCAGCAGCTTAGCTCGCAGGAAGACCAAGTCACCTCAC AAGAATCCTCGACCCAGGTCAGCTAGCGCGACCCGGGTCAGGACCCGGGATAAAGTGGAGGCGGTGAAGAGGAATCCACCTCCACTTTATCCGGTCAGCT CCAATTCAAGGAGTGCTTCAGTTGGGGAGCTGAATGAGATGATTGGGACAATGAAGCTTTCCACTAGAGGTCCTGGAACGAATCATCGTTTGTGCGAAAG CACGGATGATTTGACAGCAGGAGATATTTTCTTCTCCAGGGATGTAACTACCCCATTGCCTACTCAGAAGAACAACGGCAGTTACAACAATATGCCATCC GCAAGGTTCGAGAAGGTTAACTTGGATCACAAGGCATCAACGGGGTCTTCCAATTCGACAAGTTCGGGATCGCGAACCACCACGAGCTCTAACTCTATCC ACAGCAGTAATGGGAAGCTCAGTAGTGATACTAGTAAAGTGAGTGATGCAAGCGGAAGAACAAGTGACAGCACCAAGGCATTTGTGGCTAACAGGAAGAA GTCGTCGCAGTCGGATTCTAATTGGCTTTCTTGCATCAAAGGAAGGAGTTGTAGAGTGAAGAACTCACCCGAGAAGCAAAGATTGGACGAGTCTTCGTTC ATTGCGAGGGCTAATGTCGTTGAGAACTTGACGCAGTTTTGGGCTGATAAGTATCAGCCAAGCTCGCTGAAAGGGTTCACTTACCATAAACAAGAGGCTC AGCTTCTCAGACAACTTGTGTCTCGTGAGAATATACCTCATATCTTGTTTAAAGGACCGTCGATCTCTGGGAAGACAGCATTGATAATGGCACTTCTTGG AGACATATTTGGTGATGCTTGTCTCAACATGTCACATGACTTGAGATTCTTCCAGGCTCAGGAGAAAAAGGGAGCACAGGTTGTAGTTCCAGTAACATCA AGCGCTCATCATGTGGAGCTCAACGTCAAATCTGAACCTAATGCCATGAGTGCCTTGATGGGTTTGGTGAAAGAGATCAGCAATGCATACTCGCTAACTC CAGATATCAGCACGATAAACCCGAGGCCGGAATATAAAGTGATAGTTCTTTATGAGGCAGACAAAGCACCAGAGAATATCCAGCACTTGATCAAATGGAT CATGGACTGCTACACAGATTGTTGTAAGCTCATCCTCTGCTGTGACGATGATGTGGACGTGCTTGAATCTGTCAGAAATCGATGCAAAGTTATTAATGTC AATCCTCCCGCTACTCATGAAATCATGGAGGTTCTTGTTCATATAGCAAAGAAAGAAGAGTTTGATCTACCGATGAATTTCGCTGCTAAGATTGCTACAA AATCAAAGGACTTGAGAAGGGCAATCATGGCACTTGAAGCTTGCAGAGCACACAATTATCCTTTTGCCAATGATCAACCGATTCCAAATGGTTGGGAAGA GGTGTTGGTCGAAATCGCCAACGAAATCATGGCTGATCCGTCCCCTAAGAGGCTGTTTCTGGTAAGAGGGAAGTTGCAGAAGCTTCTTGTGGATTTTGTG CATCCTCTACTTATCCTTCAGAAACTTGTCGAACATTTCCTCAAGGAGATGCCGTCCAGTTCCAAAAGAGAGCTTTACTATTGGAAAAGCTACTATGAAA AGCGACTCCCAACAGGCACAACCGCCTTGCTCAAACTAGAAGAATTCGTGGCCAAGTTCATGAGCATGTACAGGAAGAGTATCGGGAGTCCCCAATTTTG A
AA sequence Show only first row Show all	>Lus10041764 pacid=23146604 polypeptide=Lus10041764 locus=Lus10041764.g ID=Lus10041764.BGIv1.0 annot-version=v1.0 MDLDSNYFPTLNRTRSGYEPSDVETDWKESPFRGNNNNINNNYRAGFDSDIDLDLPAGKNPPASNRQFRRFDATDDLSSSSEGGASISSSLARRKTKSPH KNPRPRSASATRVRTRDKVEAVKRNPPPLYPVSSNSRSASVGELNEMIGTMKLSTRGPGTNHRLCESTDDLTAGDIFFSRDVTTPLPTQKNNGSYNNMPS ARFEKVNLDHKASTGSSNSTSSGSRTTTSSNSIHSSNGKLSSDTSKVSDASGRTSDSTKAFVANRKKSSQSDSNWLSCIKGRSCRVKNSPEKQRLDESSF IARANVVENLTQFWADKYQPSSLKGFTYHKQEAQLLRQLVSRENIPHILFKGPSISGKTALIMALLGDIFGDACLNMSHDLRFFQAQEKKGAQVVVPVTS SAHHVELNVKSEPNAMSALMGLVKEISNAYSLTPDISTINPRPEYKVIVLYEADKAPENIQHLIKWIMDCYTDCCKLILCCDDDVDVLESVRNRCKVINV NPPATHEIMEVLVHIAKKEEFDLPMNFAAKIATKSKDLRRAIMALEACRAHNYPFANDQPIPNGWEEVLVEIANEIMADPSPKRLFLVRGKLQKLLVDFV HPLLILQKLVEHFLKEMPSSSKRELYYWKSYYEKRLPTGTTALLKLEEFVAKFMSMYRKSIGSPQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	0	1
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	5.7	0.8015
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	7.7	0.7084
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	8.1	0.8100
AT2G26390			Serine protease inhibitor (SER...		Lus10005087 [exp]	13.0	0.7876
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	13.7	0.7713
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	14.6	0.7906
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	16.5	0.7845
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	19.4	0.7853
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	21.7	0.7926
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	24.3	0.7903

Compare expression of checked genes

Lus10041764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.