Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46860 359 / 5e-128 ATPPA3 pyrophosphorylase 3 (.1) AT1G01050 357 / 3e-127 ATPPA1 pyrophosphorylase 1 (.1) AT2G18230 353 / 2e-125 ATPPA2 pyrophosphorylase 2 (.1) AT4G01480 351 / 2e-124 ATPPA5 pyrophosphorylase 5 (.1) AT3G53620 346 / 9e-123 ATPPA4 pyrophosphorylase 4 (.1) AT5G09650 77 / 1e-16 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028320 [exp] 431 / 4e-156 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 392 / 7e-141 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 389 / 9e-140 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10024422 [exp] 352 / 7e-125 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 352 / 3e-123 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10005139 [exp] 344 / 6e-122 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 344 / 6e-122 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10037239 [exp] 76 / 4e-16 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 75 / 6e-16 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022700 [exp] 383 / 3e-137 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 360 / 4e-128 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 358 / 2e-127 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 346 / 1e-122 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.009G081200 [exp] 76 / 4e-16 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 73 / 4e-15 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10041767 pacid=23146718 polypeptide=Lus10041767 locus=Lus10041767.g ID=Lus10041767.BGIv1.0 annot-version=v1.0 ATGGCCGGCAATGATGGAGAAGCCAGCAAACCCTCACAGCAACCCCGTCCAGCACTCAATGAAAGGATCCTTTCTTCATTGACACGAAGATCTGTTGCGG CGCATCCGTGGCATGATTTGGAGATTGGACCTGGGGCACCATCTGTATTCAATGTTGTTGTTGAAATTAGTAAAGGCAGCAAAGTTAAGTATGAGCTTGA CAAGAAATCTGGCCTCATAAAGGTTGATCGTGTTCTGTACTCATCGGTTGTGTACCCGCATAACTATGGTTTTATTCCGAGAACCATCTGCGAGGATAGT GATCCTATGGACGTCCTGATACTGATGCAGGAACCTGTCCTGCCTGGTTCTTTCCTTCGTGCTCGTGCCATAGGATTAATGCCTATGATTGACCAGGGTG AGAAGGATGACAAAATCATAGCAGTGTGTGCTGATGATCCAGAGTTCCGACATTACGTGGACATCAAGCAGCTTGCTCCCCATCGCTTGGCTGAAATCCG CCGCTTTTTTGAGGACTATAAGAAGAACGAGAACAAGAAAGTTGATGTGGAAGACTTCTTACCACCTCAGGCTGCCATTGATGCGATTAAGCATTCCATG GACCTCTATGCATCATACATTGTTGAGAGCCTGAGGCAGTAA
AA sequence Show only first row Show all	>Lus10041767 pacid=23146718 polypeptide=Lus10041767 locus=Lus10041767.g ID=Lus10041767.BGIv1.0 annot-version=v1.0 MAGNDGEASKPSQQPRPALNERILSSLTRRSVAAHPWHDLEIGPGAPSVFNVVVEISKGSKVKYELDKKSGLIKVDRVLYSSVVYPHNYGFIPRTICEDS DPMDVLILMQEPVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYVDIKQLAPHRLAEIRRFFEDYKKNENKKVDVEDFLPPQAAIDAIKHSM DLYASYIVESLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	1.0	0.9324
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	1.7	0.8992
AT2G25280			unknown protein		Lus10001950 [exp]	2.0	0.9177
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	2.8	0.8903
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	4.2	0.8755
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10022411 [exp]	4.4	0.8609
AT5G06280			unknown protein		Lus10016973 [exp]	5.5	0.8738
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	7.1	0.8548
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	8.5	0.8768
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	9.2	0.8592

Compare expression of checked genes

Lus10041767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.