Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36520 249 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 230 / 6e-61 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G12770 202 / 4e-53 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 199 / 5e-52 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 172 / 4e-45 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 137 / 4e-33 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 97 / 1e-20 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028322 [exp] 1478 / 0 AT4G36520 223 / 8e-59 Chaperone DnaJ-domain superfamily protein (.1) Lus10012303 [exp] 205 / 7e-54 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016079 [exp] 205 / 7e-54 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 207 / 2e-53 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10024270 [exp] 205 / 4e-53 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 203 / 1e-52 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 192 / 3e-49 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10010642 [exp] 191 / 1e-48 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10016078 [exp] 187 / 3e-47 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022600 [exp] 303 / 1e-83 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 292 / 2e-80 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 229 / 1e-60 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 223 / 1e-59 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 223 / 2e-59 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G033800 [exp] 224 / 5e-59 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G079200 [exp] 184 / 5e-49 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 166 / 6e-43 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 141 / 4e-34 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 138 / 6e-33 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10041769 pacid=23146592 polypeptide=Lus10041769 locus=Lus10041769.g ID=Lus10041769.BGIv1.0 annot-version=v1.0 ATGGAGAATCTCTCGCATTATTCTCGCCATCCCAACAGAAGTAGCAGCACTACTGCTACTACCAAGAAAAAGCTCACCACCACCAGCAATGGCACAACTA CCACCGCCAACTTTGCCTCCGGTTCCTCCATTTCTATTTACGACGACGTCTTCGGCGGCCCGCCCAAGTTCGGAGCAGCAGCAGCAGCTCATCATACCAC CCATCCCTCGCCTCTCCCGGGTGATTATCCACAGATATGCATTTCGCTGTCTCGTACGACGAGCTGGTCAGGATGGACCGGTCAAATGGTGGCCGTGGCT GTTCGTCTTCCGACGAGGCTTGGTATGGAGTCGATTGATTTCTCCTTATTCTTCGCGCTCTCCTCTTTTTTTTTTGTCTTCCCAATCTCTTTCCTTTTTT TTGCTCTGCCACCCCCAACTCGTCCTCTGTTGGAAGGCTTTCTCCAGCCCCATTCACTGCAAAGCTTGAATGCTGGAGGACTGTGGACTCCTGAAGGTGG TGAATCTCTGTCGGAAGAGTCAGATGACCCTGTAAAAGCTCAGTACTCCTCCAATGGTGATTTTTATGAGCCTGTTGATGGTAGTATGGAGTTCAATATA TCGTATCACAAAGCCAGTCAAACAAGCAGTGGAGATATTCCAAATGGGACTACCCACGTAGCTCCCCTGAACAATGCTTTTCATGGATATTCTGTCAAGG TTCATAAGTCTGGTTCATTACAACCTGATGATGAATATCCAACTCGGCTGGCGACTGATGATGATCATCTTGATATAGACTTCAGTGGAGAAATGATGGA CGGTTGGCATTTCAGCAATACTGAGAAAGTGTCCGGTGCAAATGACAGCAGACCTCGAAAGGGTTATAATCGAAACACTTCTCTTCCTGCTCATGAGTTT GTGACAATCACGGGGCTCAATCTGAAAACCGAGCCATCTCACTTGCCACCACCTGCTAGACCTCCACCTCCTGCAGTAGATGGTAAAATGAAGAATTCTG ATAAGTTGAGTCCAAGTCATAGAGTTGCTGCTTCTGAACGCGTTGCAAGTGATTGCTCTCCACCTTACTTTGATGTAGAGGTTGATGCAAGTTCAGCTGC TAGCGCATCTGCTGCAGCCATGAAAGAGGCAATGGAGAAAGCTCAAGCTAAGCTCAAGAGTGCAAAAGAATCACTGGAGAGAAAGAGAGAGGGTGTCCAA CGGCGTTCTGGATCGGGGTCCAGAACAGGAAGAAAGGACAAGGAAGGGAAGGGGAAAACGGCGGATCAAACAAGGAACGCAGAAGAAGTGAATGTTATTG GCACTGATGAAAAAGAAGAGAATGGAGGTGAATTTTTTACTTTAACAGAAAGACAAAAGGTCAAGCAGACAACTAATCCAGTTTCTGATTCAGTACAAAG GGAAAGGAATACGGTTTCTCCCAAAACTGTTGGGAAGTGCGATAGAGAATCAATATCGTCTCAAGGGTCTGATGTGATAGATGAAGCTGGTGAATGGAAA GAAGCGGGACAATATTTCGAGTTGGTGAGAGAAAAATCGGACCAGCCTTCTCAAGAAGCAAACAATGAAAACATTCCCCTTCAGAGCATAAGTATCACTG GACATGAAAATAAGGGGAAAAAGGTGGTTACCGAGGTATTGGAGCATCAGTCTGGCTGGAAAGTGAAACAAGCAGAGTCGGATTCAGGGCTTGATAGCTA TGGGACAAAATTAGATTTGTCAAAAGAATTAATTGGACAAAAGGAACTTCAAAGCGCTCAGGAGGCTTCCAGACGTGAAGACAATGACAAGAGATCTAGA AAGCATTGGCAACGGCCAGTAGAAGCTGAAAAGAAACATGCTAGAGGTGATGGATTTCTGAGGCATGACAATGTAGTAGAAGTTCACCCGGCCCAAATTG CTTTAGAGTCAAAACAGGCTTTGAAACATAGTAAAGAGGAGTTGCTACCAAAATGGGCTGGTAAGATCTTGGATGAGGAGAAGGAAGAAAATTTTGAGCA TCTGGAAGAGGAGAAAAGCGTAAATGAGTTACTCGAGCGGGAGGAAAATGAGAAGAAGCAGAAAGAGGTTCAAGAAAGGGAGGACAAAGAGAGAAAACGA AGAGAGGCTCTTCAAATGGAGGAAAATGGAAAGAGGTTGAAAGAAGACCTTGAGCGTGAAGAACACGAAAGGAGATTACAAGAGGCTGCCGAGCGGGAGA AAAATGAAAGGAAATTGAGAGAGGCTATTCAGTTGGAAGAAAGTGAAAGGAGAAAGAAAGAGACTCTTGAGATGGAAGAAATAAAGAGGCGAGAAGCCAA GGCAATTGAAGAGGCAGAGATCGAAAAGAGACAAAGAGAGGCTAAAGGAATGGGAGAGGATGAGAATGAGAAGAGGGAAAGAGAGGCTACTGAACTGGCA GAAAATGAGAAGAGGGAAAGAGAGGCTCGTCAGAGAGAGGAAAATGAAAAATGTCTTAGAGAAGCTTTTGAGACGGAGGAAGAGAAGGAGAGGAGATCAA GAGACGAGGCTTCCAAATCTGGTGATAATGATAATGCACAAAATGGAGATCTGGAGAGAGATGGAAATGATGAAAAGATTAACGATACGTTTGAACTGGA AGAAAGTATGAAGTGTGGGGTAGAAGAGGTAGTTGAACAGGTTGTGGAGGGAAGAAGTGAAGAGTTATATAACGTAGAACCTGAAGAGGAAGAGGGGCAA AGAAACACCAGCAAGCCTCATGAAGTAGAAGAGAGCAGAACATCAACATTCCAGACCGAAGAACCTTTGGTGATCTCACAGGAATCTCTAGAGTGTGAAG AGATGTTCGTGAAACATGAAGAGTTTGATGATGATGGGCATGAGAAGGGACAAAATGAGGCAGGGGAGCCTCAGAGAGAATCTTGTCAGGATCTTGATGA GGATCAGAAGCTTGACGAACCAGAGGTTGGGTCTGAAAATTCAGAAGCAGTTGCTAATGAAGAAAATGAGGAGGCACCTAGTAATCTGGGACTTGGTGAG AAATTAGCTGCGGAATCAGTCAATGTTGTTGTTGATGGTAGACCAGAAATCTATGTTGCGCAATTCAATGTGCAACCTGAAAAGCACCACATCCTAAACA CTGGAGGTCGATCAGAATTTCCATCTGGAGGCAACGATATGAAGAGAGAAGCTAAACATGATAAACAAGCTGACGGTGAAGATATTGGGAGTGCCTCTTC TTTGGCTGGGGAGAAGTTTGCAAATGACAAGGTTGAAGAACGGAGGAACATGAACAAAGAAGAGAATAGAAATGATGATATATCAGTTAAAGTAGTAAAA GAGTCTATGGAAGCTGGAAGAAAAACAGAAGCCACTCATCCGATTGCACCAGAAGTGAAACGAAGCACCAATAGAACAGCTCTGCGAACTGATGCAAGTG AGACCATGCAAAGCAAAACGAAGAAGCTTAACCAATCTCTTCCACAGGAGGGTGTAGAATCTGCAAGGTTAAAAAGAGAGAAAGATATTGAAATGGAACG TCTGAGAAAGATGGAAGAAGAGTGGGAGAGGGAAAGGGAAAGAGAGAAGGATAGGATGGCCGTTGACAGAGCAATTCTTGAATCGCGGGAAAAAGCGGAG CGGGCTGCTGCAGAGAGGGCAATGAAGGAGGCCCGAGAAAGGTTGGAGAAAGCTTGTGCTGAAGCTAGAGGGAAACCATTATCTGACAAACCATCAGATT CAAAGCTTAGAGCTGAGCGTGCAGCTGTTGAAAAGGCAAATGCGGAGGCTCGGGAACGTGCTTTCGAAAGAGCAAGGGCTGAGAGACTGTCTGCTTATGG TAACAATGGACTGAGGCAATGTTCTTCTTTCTCTCTGCTCATAACCGCTGAATTGCAGGATGTAAAAGATCCACAGTTCCAGAATGCAAGCTCGGCTAAT GGGTTCAGAAAGACGTATTCCTCTGTTCACAGTGGTACCTATAACGGGGCGAGATCTGAATCAGTTGAGGGCGAAACGGCTGAAAGGTGTAAAGCTAGAT CAGAGAGATACCGTAGAACAGCTGAACGAGCGGCAAAAGCGTTGGCTGAGAAGAACATGCGTGATGTTCTGGCTCAAAGAGAACAAGCTGAGAGAAATGT AATGAATCATCTTCCAGATAGGTTAGCTGAAAGCCTGGATGCCGAGATTAAGAGGTGGTCAAGCGGAAAGGAAGGGAATTTGCGCGCCTTGCTTTCAACC TTGCAATATATCCTGGGGCAAGAGAGTGGTTGGCAGCCAATACCGCTGACAGAGGTAATAACTGCAGCTGCTGTAAAGAAAGCTTACAGGAAAGCCACTC TGTGCGTTCATCCGGACAAATTACAACAACGCGGCGCAAGCATACATCAAAAGTACATATGCGAGAAGGTCTTCGATCTCCTCAAGGAAGCTTGGAGCAA ATTCAACTCAGGGGAGAGGTAG
AA sequence Show only first row Show all	>Lus10041769 pacid=23146592 polypeptide=Lus10041769 locus=Lus10041769.g ID=Lus10041769.BGIv1.0 annot-version=v1.0 MENLSHYSRHPNRSSSTTATTKKKLTTTSNGTTTTANFASGSSISIYDDVFGGPPKFGAAAAAHHTTHPSPLPGDYPQICISLSRTTSWSGWTGQMVAVA VRLPTRLGMESIDFSLFFALSSFFFVFPISFLFFALPPPTRPLLEGFLQPHSLQSLNAGGLWTPEGGESLSEESDDPVKAQYSSNGDFYEPVDGSMEFNI SYHKASQTSSGDIPNGTTHVAPLNNAFHGYSVKVHKSGSLQPDDEYPTRLATDDDHLDIDFSGEMMDGWHFSNTEKVSGANDSRPRKGYNRNTSLPAHEF VTITGLNLKTEPSHLPPPARPPPPAVDGKMKNSDKLSPSHRVAASERVASDCSPPYFDVEVDASSAASASAAAMKEAMEKAQAKLKSAKESLERKREGVQ RRSGSGSRTGRKDKEGKGKTADQTRNAEEVNVIGTDEKEENGGEFFTLTERQKVKQTTNPVSDSVQRERNTVSPKTVGKCDRESISSQGSDVIDEAGEWK EAGQYFELVREKSDQPSQEANNENIPLQSISITGHENKGKKVVTEVLEHQSGWKVKQAESDSGLDSYGTKLDLSKELIGQKELQSAQEASRREDNDKRSR KHWQRPVEAEKKHARGDGFLRHDNVVEVHPAQIALESKQALKHSKEELLPKWAGKILDEEKEENFEHLEEEKSVNELLEREENEKKQKEVQEREDKERKR REALQMEENGKRLKEDLEREEHERRLQEAAEREKNERKLREAIQLEESERRKKETLEMEEIKRREAKAIEEAEIEKRQREAKGMGEDENEKREREATELA ENEKREREARQREENEKCLREAFETEEEKERRSRDEASKSGDNDNAQNGDLERDGNDEKINDTFELEESMKCGVEEVVEQVVEGRSEELYNVEPEEEEGQ RNTSKPHEVEESRTSTFQTEEPLVISQESLECEEMFVKHEEFDDDGHEKGQNEAGEPQRESCQDLDEDQKLDEPEVGSENSEAVANEENEEAPSNLGLGE KLAAESVNVVVDGRPEIYVAQFNVQPEKHHILNTGGRSEFPSGGNDMKREAKHDKQADGEDIGSASSLAGEKFANDKVEERRNMNKEENRNDDISVKVVK ESMEAGRKTEATHPIAPEVKRSTNRTALRTDASETMQSKTKKLNQSLPQEGVESARLKREKDIEMERLRKMEEEWEREREREKDRMAVDRAILESREKAE RAAAERAMKEARERLEKACAEARGKPLSDKPSDSKLRAERAAVEKANAEARERAFERARAERLSAYGNNGLRQCSSFSLLITAELQDVKDPQFQNASSAN GFRKTYSSVHSGTYNGARSESVEGETAERCKARSERYRRTAERAAKALAEKNMRDVLAQREQAERNVMNHLPDRLAESLDAEIKRWSSGKEGNLRALLST LQYILGQESGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIHQKYICEKVFDLLKEAWSKFNSGER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10041769 [exp]	0	1
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	1.0	0.8979
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10033236 [exp]	9.8	0.7873
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	13.0	0.7813
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	14.4	0.7353
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10021331 [exp]	15.5	0.6859
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10001832 [exp]	32.2	0.7324
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	37.9	0.7934
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	39.6	0.7619
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	64.7	0.7187
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	66.0	0.7444

Compare expression of checked genes

Lus10041769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.