Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66500 499 / 7e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 306 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 296 / 7e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 276 / 3e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 276 / 2e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22150 279 / 4e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 271 / 6e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 273 / 2e-81 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 274 / 4e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 270 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028323 [exp] 353 / 8e-120 AT5G66500 193 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 318 / 1e-100 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028082 [exp] 290 / 2e-89 AT4G08210 777 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015898 [exp] 283 / 3e-86 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030124 [exp] 276 / 4e-86 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 281 / 2e-83 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 272 / 2e-83 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 273 / 4e-83 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 272 / 5e-83 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022500 [exp] 612 / 0 AT5G66500 582 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 311 / 2e-97 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 287 / 1e-85 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 278 / 4e-85 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G007800 [exp] 278 / 7e-84 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 277 / 1e-83 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 276 / 3e-83 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 272 / 7e-83 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 275 / 1e-82 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 273 / 7e-82 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041770 pacid=23146626 polypeptide=Lus10041770 locus=Lus10041770.g ID=Lus10041770.BGIv1.0 annot-version=v1.0 ATGAACTCTTCTTCTCTTCGTTGCTTTCGCGTTTTCGATTCCCCAGCGATAATCCAAGCAAAATGTCTCTCTGCAACCGCCACTGTCATAGATACTCGAA ACTCTTTTCGTCATGCCACCCACCTGTTCGACGAATTGCCTCAAGGAAGCCTCTCTTCTCTCAACTCCCAACTCGCTCTTCTCGCTCGACGCTGTAACTT CGTAGCTGTCTGGGATCAGTTTCGCAGAATGCATCGCGCTTCACTTCCGCTCGATGCTTACACTTTCACCCCCGTTCTCTCCGCTTGCTCTGCTTTGCCC GGCCACCAACGTGGCACGCAAGTTCATGCTTTGATGATCAAGGTGGGTACTAGTTTAGGCACCATTAGCAAAACGGCCCTCATGGACATGTACTCCAAGT ACGGCTGCTTTGACGACTCGGTGACCGTGTTTGGAGAGATGGAGTCCCCAGATGTCGTCAGCTGGAACGCTTTGATTTCGAGCTATTTGAGGAATGATCT CACCAAGGAAGCACTTGCTGCTTTTGTTGCAATGAGGGATCGTGGAGTGGAGTTTAGTGAGTTTACTCTGTGTTCTGTGGTAAAAGCGTGCGTCTTGTTG AAGGCTTCTCTAATTGGTAAGCAGGTTCATAGCTTGGTGATTGTGATGGGGCGTGATCTTGTGGTTCTAGGTACTGCTCTTATTGATTTTTACTCTGCCA TTGGAGAGATTAGCCAAGCTTTGAGTATTTTCACTGGATTAAGTTGGAAAAATGATAATGTGATGTGGAACTGTTTGGTTTCTGGCTGTGTTAAGAACCG GAGATATAAGGAAGCGTTTGGTGTAATTAGTATGATGAGACCTAATGCCGTTAGCCTCACTAGCATTCTCACCGCTTGCTCTGAGATCTCTGATCTACGT ACCGGAATGCAGGTTCACTGTGTAGCAATCCGTTATGGGCTTGTTTCGCAGACTCAATTGTGCAATGCATTGTTAGATATGTATGCTAAATGTGGGAGGA TTTCAAAAGGTAGGTCAGTATTTGATAAGATCATTAGCAAAGATGTCGTGTCCTGGACTACCATGATTGATGCATACGGAAAGCATGGCTATGGACTTGA AGCTCTTGAGTTGTTCAACAAAATGGGGGAGGTATTGCCAAATTCGGTAACGCTTCTTGCTGTTCTATCGGCTTGTGGTCATGCAGGGCTGGTAAACGAA GGCCTGCAGATTTCCAAGCATATGAAGGAGAAATACAGTCTGCAGCCTGGTGTAGAGCACTATAGCTGTTTCATAGATGTGCTGGGGAGGGCTGGATGTA TAGAAGATGCTTGGTCCTTGTACGATGATATGATTGAGCATGGAATTAGGCCTACTAGTGGAATCTGGGCTTCACTACTCAACGTTTGTAATCTCAACGA AGACGCTTCAAGAGGTGAGTTTGCAGCCCAGAATCTCTTGGCGTTGGAACTGAACAATCCCGGGATCAATGTGCTGCTTTCGAATTTCTTTGCATCCATT GGGAGATGGGATGCTGTTGGCAGCTTGAGAAGCAACATGAAGGATAAAGGCCTGTCGAAAGAGTCTGGAAGTAGCCGGGTCAACCACCACCTGTTTACAG GTGATTTGGGACGAAATCTCTTTAGAGGCATCAAGTATGCAATTTTATGGCATCCTATTGGTCCTGGAAATGTGTAA
AA sequence Show only first row Show all	>Lus10041770 pacid=23146626 polypeptide=Lus10041770 locus=Lus10041770.g ID=Lus10041770.BGIv1.0 annot-version=v1.0 MNSSSLRCFRVFDSPAIIQAKCLSATATVIDTRNSFRHATHLFDELPQGSLSSLNSQLALLARRCNFVAVWDQFRRMHRASLPLDAYTFTPVLSACSALP GHQRGTQVHALMIKVGTSLGTISKTALMDMYSKYGCFDDSVTVFGEMESPDVVSWNALISSYLRNDLTKEALAAFVAMRDRGVEFSEFTLCSVVKACVLL KASLIGKQVHSLVIVMGRDLVVLGTALIDFYSAIGEISQALSIFTGLSWKNDNVMWNCLVSGCVKNRRYKEAFGVISMMRPNAVSLTSILTACSEISDLR TGMQVHCVAIRYGLVSQTQLCNALLDMYAKCGRISKGRSVFDKIISKDVVSWTTMIDAYGKHGYGLEALELFNKMGEVLPNSVTLLAVLSACGHAGLVNE GLQISKHMKEKYSLQPGVEHYSCFIDVLGRAGCIEDAWSLYDDMIEHGIRPTSGIWASLLNVCNLNEDASRGEFAAQNLLALELNNPGINVLLSNFFASI GRWDAVGSLRSNMKDKGLSKESGSSRVNHHLFTGDLGRNLFRGIKYAILWHPIGPGNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	0	1
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	1.0	0.9251
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	1.4	0.9119
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	3.5	0.8402
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	3.9	0.9064
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	4.2	0.8662
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	6.3	0.8457
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	10.4	0.8220
AT1G34380			5'-3' exonuclease family prote...		Lus10006622 [exp]	10.6	0.7622
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	10.7	0.8684
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	11.5	0.8007

Compare expression of checked genes

Lus10041770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.