Plant FIBer expression Database

Lus10041771 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18210 80 / 2e-20 unknown protein
AT4G36500 75 / 2e-18 unknown protein
AT3G50900 73 / 6e-18 unknown protein
AT5G66490 64 / 4e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028324
[exp]
192 / 6e-65 AT2G18210 88 / 1e-23 unknown protein
Lus10025997
[exp]
124 / 9e-38 AT4G36500 73 / 1e-17 unknown protein
Lus10025998
[exp]
122 / 4e-37 AT2G18210 72 / 3e-17 unknown protein
Lus10014291
[exp]
120 / 3e-36 AT4G36500 71 / 7e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G022300
[exp]
93 / 1e-25 AT3G50900 84 / 3e-22 unknown protein
Potri.007G022200
[exp]
69 / 3e-16 AT2G18210 56 / 8e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10041771 pacid=23146970 polypeptide=Lus10041771 locus=Lus10041771.g ID=Lus10041771.BGIv1.0 annot-version=v1.0
ATGCTGAGAGCATTGAGCACTCGCAGGAGCCATAGCAAGTATGAGAAGCTAGTGGACGATTCCTCCGTGGGTCTTCTGGGAGGTGAGCTTAGAAGGAGCA
ACACCTTACCCGTTCAATATCTTGGATCATCCGGAGGGGGGCATAAGCTAGCTAATCTGGAGGTGAAGCTACCAGCTTTGCCCCCGCCGCCGGTGAAGCC
GGCCAAGAAGAGTAGCAAAACCCACCCTCTTTTCAGCTTCTTCGATACTCGCCGGAAGAAGAGGACGACGTCAAGGCCGGAGTTTGCGAGGTATATTGAG
TATGTGAAGGAAGGAGGAAGGTGGGACAAGAGTTCCGGCATGCCTGTAATATACTAG
AA sequence
>Lus10041771 pacid=23146970 polypeptide=Lus10041771 locus=Lus10041771.g ID=Lus10041771.BGIv1.0 annot-version=v1.0
MLRALSTRRSHSKYEKLVDDSSVGLLGGELRRSNTLPVQYLGSSGGGHKLANLEVKLPALPPPPVKPAKKSSKTHPLFSFFDTRRKKRTTSRPEFARYIE
YVKEGGRWDKSSGMPVIY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G18210 unknown protein Lus10041771
[exp]
0 1
AT5G13190 AtGILP GSH-induced LITAF domain prote... Lus10001805
[exp]
3.7 0.9561
AT4G37420 Domain of unknown function (DU... Lus10013221
[exp]
6.6 0.9373
AT4G20380 LSD1 LESION SIMULATING DISEASE, LSD... Lus10008066
[exp]
7.3 0.9342
AT3G61640 AGP20, ATAGP20 arabinogalactan protein 20 (.1... Lus10041273
[exp]
9.8 0.9421
AT3G48140 B12D protein (.1) Lus10015825
[exp]
11.3 0.9261
AT3G48140 B12D protein (.1) Lus10036977
[exp]
11.8 0.9566
AT5G58620 C3HZnF zinc finger (CCCH-type) family... Lus10018243
[exp]
12.2 0.9543
AT2G37430 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers sup... Lus10024428
[exp]
21.7 0.9488
AT3G50930 BCS1 cytochrome BC1 synthesis (.1) Lus10025989
[exp]
29.2 0.9415
AT4G11600 LSC803, PHGPX, ... glutathione peroxidase 6 (.1) Lus10008537
[exp]
29.7 0.9051

Lus10041771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.