Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50910 282 / 1e-90 unknown protein AT5G66480 199 / 8e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028325 [exp] 788 / 0 AT3G50910 305 / 3e-99 unknown protein Lus10025996 [exp] 573 / 0 AT3G50910 302 / 3e-98 unknown protein Lus10014290 [exp] 568 / 0 AT3G50910 313 / 2e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022100 [exp] 385 / 4e-130 AT3G50910 240 / 5e-74 unknown protein Potri.005G120600 [exp] 370 / 2e-124 AT3G50910 230 / 6e-70 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041772 pacid=23146939 polypeptide=Lus10041772 locus=Lus10041772.g ID=Lus10041772.BGIv1.0 annot-version=v1.0 ATGCCTACATTCAGCGTTGTGACGTTGGACAGGTTGTTAGAACCTGGAGTTTCTGTATCTGCTGACAAGTCTACTCCACCCGGTGTCAATCTCGTTCCAA AGCCAAAGCCTCCATCTCGTTCTACACTGCATAGGAGAAACAGTACCTCAATCACTGACAGGAGTCCTCATCGTCCAAGGCTAATCCCTTCATTGTACAC CACCCCTGAAGCAACTCCTGTCCCTCCTGATTCACCAAAATCTTATACCCCATCACCATACATCATCAATCACAAGCGGAGGGGGCCACGTCTTTCAAAG AGCACTTCTGTAGGCAACCTTGCCTCACCGAAGAAGGAGTTAGATAAGGACGAAGTTGATGGGGGTTCAAAGGGTGTAGAAACACATGTCAATGTGACTA GGAATCAGCCTGCTGCTCCAGGTCGTCTTGATTTTGGAAGAATTGAGCATAAGAATCTAAGTCGTGAAAGCCCCAAGGAGCAGGATCTCCCTAATGGCAT CCACAGTTTGTCTACAAAACCAGAGCTTATCAATGGTCACCATGATGGTGCAAAAGTCGGTAGTAATGGAAAAGTCGGAATGTCTGACATGAGGTATGCC TTTCTAAAGGAAAAAGACGGTGCGAGTGCGCGAGATAGTGATACCGAGGACTTCTTTGATCCACGTGATTCAATGAGTCTTTCTAGCACTACTGACGGGG AAGACAATTTTGGAAGTTCTTCTAAGCTGAGTGCTAGTACACATATGGCAGAGTTCTTTGATGCTTGGGAAGAACTATCATCTGAAAGTGGATCACAGTC GGCTCTGCATGATTTTCAAACTGAATTGCGGGAAATAAGGTTCAGTTTGCTGATGGAGATAGAGAAGCGTAAGCAAGCAGAGGATGCCTTCAAAAATGTG CAAAGCCAATGGCAGAGGATCGGAGAACAACTAGCTCTTGCAGGATTATCTGTTCCTCCTTGTCCCATTGATGTAACAGAGAATGATGAGCCAATCAGTG CTGATCCTGCAGAAGAGTTGTGCCAGCAGCTCGATATAATTCGCTTCGTATCCAATTCCATTGGTGGGGGAATTGCAAGAGCTGAGACGGAGGTGGAGAT GGAAGCACGGATTGAGGCAAAGAACTTTGAGATCGCACGATTGATGGACCGGCTTCGTTATTATGAGGCCGTGAATCACGAGATGTCACAAAGGAACCAA GAAGCCGTAGAAATGGGTCGTCGAAATAGGCAGATGCAGAAAAGGAGGCAAAGGTGGGTTTGGGGTTCAATAGCTGCTGCAATTACTCTTGGCACTACAG CTCTAGCATGGTCTTACCTTCCGTCAATAGCTCCAGCCAGTAGTAGTTCCTCGGAAACTGAGCAGAACAACACAGCTTCAGATTGA
AA sequence Show only first row Show all	>Lus10041772 pacid=23146939 polypeptide=Lus10041772 locus=Lus10041772.g ID=Lus10041772.BGIv1.0 annot-version=v1.0 MPTFSVVTLDRLLEPGVSVSADKSTPPGVNLVPKPKPPSRSTLHRRNSTSITDRSPHRPRLIPSLYTTPEATPVPPDSPKSYTPSPYIINHKRRGPRLSK STSVGNLASPKKELDKDEVDGGSKGVETHVNVTRNQPAAPGRLDFGRIEHKNLSRESPKEQDLPNGIHSLSTKPELINGHHDGAKVGSNGKVGMSDMRYA FLKEKDGASARDSDTEDFFDPRDSMSLSSTTDGEDNFGSSSKLSASTHMAEFFDAWEELSSESGSQSALHDFQTELREIRFSLLMEIEKRKQAEDAFKNV QSQWQRIGEQLALAGLSVPPCPIDVTENDEPISADPAEELCQQLDIIRFVSNSIGGGIARAETEVEMEARIEAKNFEIARLMDRLRYYEAVNHEMSQRNQ EAVEMGRRNRQMQKRRQRWVWGSIAAAITLGTTALAWSYLPSIAPASSSSSETEQNNTASD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50910			unknown protein		Lus10041772 [exp]	0	1
AT3G15760			unknown protein		Lus10043269 [exp]	1.4	0.8649
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	2.4	0.8069
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	3.7	0.8167
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034252 [exp]	4.5	0.7986
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	7.7	0.7737
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	8.1	0.7985
AT4G02920			unknown protein		Lus10027996 [exp]	10.4	0.8054
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	13.7	0.7579
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	14.3	0.7721
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	14.7	0.7402

Compare expression of checked genes

Lus10041772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.