Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50920 103 / 1e-26 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G66450 101 / 4e-26 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G03080 45 / 2e-05 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028326 [exp] 357 / 1e-125 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041774 [exp] 167 / 5e-51 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028327 [exp] 166 / 2e-50 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028328 [exp] 164 / 1e-49 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 41 / 0.0004 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021600 [exp] 125 / 7e-35 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.005G120400 [exp] 100 / 4e-25 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.016G086700 [exp] 44 / 4e-05 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.006G130700 [exp] 43 / 7e-05 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041773 pacid=23146768 polypeptide=Lus10041773 locus=Lus10041773.g ID=Lus10041773.BGIv1.0 annot-version=v1.0 ATGATCTCCCCGACTCTTCTTCTCTGCAGACCCACCTTTAACTTCTCTTTGCGTCTCCCTTACCGGCCTGCTTCGTCCAGACTCGGCCTGCCTCGACTTG TCCTCTCGGCTGGAAAATCTTCCGACTTTGGTGGGAAATTAACGAGTTCGAGAGAAGAAGATGTACTTTCATCGAACACCTTGCCGGCAGATAAGCTGGC TGGAACTCCCAGGGAGAGTAAAGAGGAAACGACGAGATTGACTGAGCAGGAATCTGCTGTGGGCGATGATGGACTCGGGGCCAAACTCAATAGTATGAGC AAGTGGATAGGGTCGGTGGCTATTTGTGCTTTCTATCTATGGAGGCGTGACGGAGAGGGAATGTGGGTGGGTGGTGGTGCAGTGGTTAACTACTTGCTAT CGGTGTCACTGAAATCCATTCTGAATCAAGAAAGGCCAGCGCTTGCTTCTAAATCTGACCCAGGAATGCCTTCGTCACATGCACAAACCTTATTCTACAT TGTCACTTACGCCATCCTCTCAACTTTGAAATGGCACGGAGTGGATCAAGTTTCAGTGATCCTCAGTACCCTTTTCTTCGCAATCATGGCAACGAGTGTC GCAGAAATTCCACACACCGGGCCAAGTGGTGGTGGGAGCTGCAGTAGGGTCAACTTTCTCAAGTCTCTGGTTTTGGTTATGGAGTGA
AA sequence Show only first row Show all	>Lus10041773 pacid=23146768 polypeptide=Lus10041773 locus=Lus10041773.g ID=Lus10041773.BGIv1.0 annot-version=v1.0 MISPTLLLCRPTFNFSLRLPYRPASSRLGLPRLVLSAGKSSDFGGKLTSSREEDVLSSNTLPADKLAGTPRESKEETTRLTEQESAVGDDGLGAKLNSMS KWIGSVAICAFYLWRRDGEGMWVGGGAVVNYLLSVSLKSILNQERPALASKSDPGMPSSHAQTLFYIVTYAILSTLKWHGVDQVSVILSTLFFAIMATSV AEIPHTGPSGGGSCSRVNFLKSLVLVME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50920			Phosphatidic acid phosphatase ...		Lus10041773 [exp]	0	1
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10009238 [exp]	9.2	0.8599
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	14.0	0.8834
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10014036 [exp]	22.6	0.8629
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	24.9	0.8605
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10036550 [exp]	42.3	0.8517
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	51.6	0.8409
AT2G27430			ARM repeat superfamily protein...		Lus10001881 [exp]	70.4	0.8326
					Lus10026417 [exp]	86.5	0.8300
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10039712 [exp]	100.2	0.8083
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10015133 [exp]	126.4	0.7846

Compare expression of checked genes

Lus10041773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.