Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66450 206 / 6e-66 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT3G50920 193 / 3e-61 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028328 [exp] 431 / 6e-154 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028326 [exp] 225 / 1e-72 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028327 [exp] 202 / 2e-63 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 47 / 5e-06 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1) Lus10041773 [exp] 0 / 1 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021600 [exp] 231 / 3e-75 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.005G120400 [exp] 231 / 5e-75 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.006G130700 [exp] 49 / 1e-06 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.016G086700 [exp] 48 / 2e-06 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10041774 pacid=23146647 polypeptide=Lus10041774 locus=Lus10041774.g ID=Lus10041774.BGIv1.0 annot-version=v1.0 ATGATCGCCTGCCTAACCCTTATCCCTCAACCCACTTTAAGATTTTCCTCCATTAGTCCTTACGAGGTCAAATCCTACAGACCCAGTTCGCGTCTTCGAC TTTCTGCTCGGAAATCTGCCGACTTCGGTCGGACTGCTACTACGGGTAATAAGAGAGCTGTAATTTCGTCGAACACCATGCCTGCAGAAATAGAGAAATC GTCTGGGATAAGCAGCTGGGCGAGTAAAAACGAGGAAAGTATCGGTGTGCTCGAGCAGGAAGCTTTTGTCGAAGAGTCAGCCCAGTTTCAAGCTTTATCG ATTAGCAGCAGTGGATTGGAAGCCACCCTCAATAGTATGAGCAAATGGTTAGCATCGGCTGCGTTCGGAGTTTTGTTTCTGTGGAGGCATGATGCGGAAG CTATGTGGGTGGTTACGGGTGCTGTGGTGAATACTATACTGTCAGTTGCACTCAAACGGATTTTGAACCAAGAGAGACCATTTCCTACTGCCAAATCTGA CCCTGGAATGCCTTCTTCGCATGCTCAATCCATATTCTACATTGTTGCCTTTGCCGTCCTTGCGACTGTGGAATGGCTAGGAGTGAATGGAAGTTCTGTT ATCCTCAGCTCCCTTCTTTTGGCAATTGGCTCCTATTTTTCATGGCTACGAGTGTCACAAAAGCTACACACAGTGAGCCAAGTGGTGGTTGGGGCTATAG TCGGGGCAAGTTTCTCAACCCTGTGGTATTGGCTATGGAATGAATATGTGCTCCGGGCTTTCATTTCATCTATTTGGGTTCGGCTGATGGTTGTTCTGGG CGCTCTTGTGTTCTCCGTATCCTTCATCGTATATGCCATTAACCACTGGCTGAATGATGATTAG
AA sequence Show only first row Show all	>Lus10041774 pacid=23146647 polypeptide=Lus10041774 locus=Lus10041774.g ID=Lus10041774.BGIv1.0 annot-version=v1.0 MIACLTLIPQPTLRFSSISPYEVKSYRPSSRLRLSARKSADFGRTATTGNKRAVISSNTMPAEIEKSSGISSWASKNEESIGVLEQEAFVEESAQFQALS ISSSGLEATLNSMSKWLASAAFGVLFLWRHDAEAMWVVTGAVVNTILSVALKRILNQERPFPTAKSDPGMPSSHAQSIFYIVAFAVLATVEWLGVNGSSV ILSSLLLAIGSYFSWLRVSQKLHTVSQVVVGAIVGASFSTLWYWLWNEYVLRAFISSIWVRLMVVLGALVFSVSFIVYAINHWLNDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	0	1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	1.0	0.8977
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	2.0	0.8919
AT3G03210			unknown protein		Lus10010965 [exp]	3.5	0.8868
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	3.5	0.8617
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	4.4	0.8489
AT5G25050			Major facilitator superfamily ...		Lus10003419 [exp]	5.3	0.8436
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	7.1	0.8789
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	8.8	0.8618
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	8.8	0.8436
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	9.0	0.8436

Compare expression of checked genes

Lus10041774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.