Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36470 391 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 229 / 1e-71 JMT jasmonic acid carboxyl methyltransferase (.1) AT5G38020 217 / 2e-67 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 217 / 4e-67 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G11480 216 / 5e-67 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 212 / 2e-65 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 203 / 3e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 195 / 7e-59 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 171 / 7e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55250 166 / 2e-47 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025993 [exp] 240 / 4e-75 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 224 / 4e-70 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 221 / 4e-69 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10036547 [exp] 210 / 2e-64 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 210 / 2e-64 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 207 / 5e-63 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 210 / 3e-62 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028330 [exp] 188 / 2e-59 AT4G36470 87 / 1e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 157 / 3e-44 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021400 [exp] 434 / 4e-152 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 259 / 7e-84 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G021300 [exp] 259 / 1e-83 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 257 / 5e-83 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 256 / 1e-82 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022000 [exp] 253 / 2e-81 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G045900 [exp] 209 / 4e-64 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022402 [exp] 207 / 1e-63 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 181 / 3e-53 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 176 / 1e-51 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041776 pacid=23147054 polypeptide=Lus10041776 locus=Lus10041776.g ID=Lus10041776.BGIv1.0 annot-version=v1.0 ATGGATGTAGAGGAAATCTTCCACATGAACGGCGGCACCGGCTACACCAGCTACGCCACCAACTCCCATCTCCAGAAAAAGGCATCCGACATGGTCAAGC ACCTCACTATCCACGCAATCCAACAGGTTTACCTCTCGATTCATCCCGATACTTTTTCCATCGCCGATTTGGGCTGCTCCTCCGGCCCCAACACCCTCTC CATCGTCGGAGACTTGGTCGAAGCCGTTGACTCAGCCGCCCGCCGGGATAAATCCACCACCACGCCGCTGCCGGAGATCCGCGTCTGCCTCAACGACCTC CCCACCAACGACTTCAACTCCGTCTTCAAATCCCTCCCGGATTTCTACCGCGGCCTCCGCCGGCGGGAAACAATCGACGGCGGCAGTGGTTCACGGCCGC CCATTTTCGTCTCCGCTCACCCGGCGTCGTTTTACGGCAGGCTTTTCCTTTCTTCTTCACTCCATTTCATCTACTCTTCTTACAGCCTTCACTGGCTCTC CAAGGTACCTCCAGGGCTGTACGATGAAGAAGGGAAGTCTATCAACAAAGGCAACATTTACATAGCTGAATCAAGTCCTCTGGCTGTTTCCAGTGCATAT GTTAACCAATTCCAGTCGGATTTCTCACTCTTCCTCCGATTTCGGGCAGAGGAACTCGTCCCTGGCGGGAGAATGGTGTTGATCCTCACCGGGAGAATTG GTCATGACCATGTTGACAGGGGCAACTCATTGTTATGGCAACTTCTATCCAGATCTTTAGCTGTTTTAGCTTCTCAGCTGGGTGGAATCGAGGAGGAAAG AATCGACTCATATGATGTGCATTTCTATGCTCCATCTAGGGTTGAAATTGAAGCTGAGATTGAGAACCAAGGCTTGTTTGAGTTGGAAAGGTTTGAGACA TTTGGGGTTGATCATCAGTCGAAATTTGACGAGGCTAAGGATAGAAGTAGCTTGGGAAGAGAAGTTGCAAGGACAGTTAGGAGTGTACAGGAATCAATGT TGTCTCGACACTTTGGGGATGGGCTGAGTTTGGACAGATTGTTTGACATCTTTGCTACCATGGTGGATGAAGAGCTTGCCATTGCTGAAATCAGGCCAGC TAACTTCATCCTAGTTCTTAGAAAACTATGA
AA sequence Show only first row Show all	>Lus10041776 pacid=23147054 polypeptide=Lus10041776 locus=Lus10041776.g ID=Lus10041776.BGIv1.0 annot-version=v1.0 MDVEEIFHMNGGTGYTSYATNSHLQKKASDMVKHLTIHAIQQVYLSIHPDTFSIADLGCSSGPNTLSIVGDLVEAVDSAARRDKSTTTPLPEIRVCLNDL PTNDFNSVFKSLPDFYRGLRRRETIDGGSGSRPPIFVSAHPASFYGRLFLSSSLHFIYSSYSLHWLSKVPPGLYDEEGKSINKGNIYIAESSPLAVSSAY VNQFQSDFSLFLRFRAEELVPGGRMVLILTGRIGHDHVDRGNSLLWQLLSRSLAVLASQLGGIEEERIDSYDVHFYAPSRVEIEAEIENQGLFELERFET FGVDHQSKFDEAKDRSSLGREVARTVRSVQESMLSRHFGDGLSLDRLFDIFATMVDEELAIAEIRPANFILVLRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041776 [exp]	0	1
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	3.0	0.8327
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	9.5	0.8200
AT2G39210			Major facilitator superfamily ...		Lus10037948 [exp]	11.9	0.7415
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	12.3	0.7807
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	15.9	0.7953
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	22.6	0.7869
AT4G17250			unknown protein		Lus10008508 [exp]	24.2	0.7798
AT4G17250			unknown protein		Lus10000731 [exp]	61.0	0.7314
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	61.2	0.7565
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	66.8	0.7261

Compare expression of checked genes

Lus10041776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.