Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18180 617 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 617 / 0 ATSFH12 SEC14-like 12 (.1) AT4G39180 516 / 4e-179 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 514 / 2e-177 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 509 / 1e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 503 / 5e-174 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 479 / 4e-165 ATSFH3 SEC14-like 3 (.1.2.3) AT2G16380 479 / 5e-165 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 470 / 1e-160 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 433 / 4e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028332 [exp] 1025 / 0 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 816 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 521 / 1e-180 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 521 / 6e-180 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10040431 [exp] 511 / 5e-176 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 489 / 1e-166 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 486 / 1e-166 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 476 / 4e-162 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026355 [exp] 466 / 1e-159 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119700 [exp] 658 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 630 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157600 [exp] 576 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.009G119400 [exp] 568 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157700 [exp] 524 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 514 / 3e-177 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 470 / 3e-160 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 469 / 2e-159 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 387 / 1e-127 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 336 / 3e-108 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10041779 pacid=23146830 polypeptide=Lus10041779 locus=Lus10041779.g ID=Lus10041779.BGIv1.0 annot-version=v1.0 ATGTCGGTCGAGATCGAGGATGAGCACGATGCCGAGGAGTTGAAGCAAGTCGATGCGTTCCGTCAGGTTCTTATATTGGAAGAGCTTCTGCCTTCCAAGC ACGATGATTACCATGTCATGCTTCGGTTCCTCAAGGCGAGGAAATTCGACCTCGAGAAAACCAAGCAAATGTGGTCCGATATGCTTCAGTGGAGGAAAGA ATTCGGAGCCGACACAATCATGGAGGATTTCGAATTCAACGAGATAGATGAAGTGTTGCAGCACTATCCGCAAGGGCATCACGGTGTGGATATGGAAGGT AGACCGATTTACATCGAGAGGCTTGGACTAGTCGACGCCACGAAGCTAATGCAAGCCACCAACATGGATAGATACGTGAAGTACCATGTTCAGGAATTTG AGAGAACTTTTGTAGTGAAGTTTCCTGCTTGCTCCATTGCTGCTAAGAAGCAAATTGATCAAAGTACCACCATCTTGGATGTTCAGGGAGTGGGTCTTAA GAACTTCAACAAGGCTGCAAGGGAGCTCATCACCCGCCTTCAGAAGGTTGATGGTGACAATTACCCTGAGACATTGAACCGAATGTTCATCATTAATGCC GGTTCTGGATTCAGAATGTTATGGAACACTGTGAAATCCTTCCTTGACCCTAAGACAACAGCTAAGATTCATGTTCTTGGCAATAAGTACCAGAGCAAGT TGCTTGAGATCATTGATGCTAGCGAGTTGCCAGAGTTCTTGGGAGGAACTTGCACGTGCGAGGAACATGGTGGCTGCATGCGGTCTGATAAAGGTCCATG GAAGAATGAAGAAATCATTAAGATGATTCAAAATGGAGAGCACAAATGTAAAAAGACAAGTAGTGAGCTTGATGATAAACCAGATGAGAAGACCATCTCT GAGGATGCGATTGTCTACACAAAGGGAAATGATTCCAAGGAAGAGTCAAATCCAGAGGGGCATAACAACATGGCAGTAGTTCCAAGGTCCCAAATTGAGC ACCCTCAGATTGCTCCAATCCTTCACCAGCTCAGTAAGAAAATGTCATTGAAAGGCTACAATGGTGCAATTGTTAAGAAACAAGCTAACGTTAGGTGGAA GAAAGCAGTCAACAATCAGAAATTTGGTGCCCTCGCTAAAGGTCCATTGAATGCTCACAATTTATCAGCAGACAGTTTACCGTTCATAGATGCTCACAAG TTTCTTGCTGAGGGGGCAAGCTCCCCGTTGATCACCGGTGTCATGGCGTTTGTGACGGGGATCGTAACGATGATCAAGGTGACGAGGAACATGCCGAAGA AGCTAAGCAATGGTACGGTCCACCCTGGCGCAATGTATTACGACGAACAAATGCCAAGAGTAATGCAGCCTATAGTCACTCAGCCTGCAGTGCCTACAGT GGCTGTATCAGAGTTCATGGCCGTGGTGAAAAAGATGAATGAGATGGAAGATAAAGTGACCGTGTTGAGCAACCGGCCGAATCTGATGCCTGCTGAGAAA GAGGACTTGTTGAATGCCGCTTTGAGCCGGATCGATACCTTGGAGGAAGAGCTTGCTGCTACCAAGAAGAACCCAACTGGACCGGCCGTTCTGACTGGTC CAATTGGTCTGACCACGAACCAAATTCCCGTTTAA
AA sequence Show only first row Show all	>Lus10041779 pacid=23146830 polypeptide=Lus10041779 locus=Lus10041779.g ID=Lus10041779.BGIv1.0 annot-version=v1.0 MSVEIEDEHDAEELKQVDAFRQVLILEELLPSKHDDYHVMLRFLKARKFDLEKTKQMWSDMLQWRKEFGADTIMEDFEFNEIDEVLQHYPQGHHGVDMEG RPIYIERLGLVDATKLMQATNMDRYVKYHVQEFERTFVVKFPACSIAAKKQIDQSTTILDVQGVGLKNFNKAARELITRLQKVDGDNYPETLNRMFIINA GSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCEEHGGCMRSDKGPWKNEEIIKMIQNGEHKCKKTSSELDDKPDEKTIS EDAIVYTKGNDSKEESNPEGHNNMAVVPRSQIEHPQIAPILHQLSKKMSLKGYNGAIVKKQANVRWKKAVNNQKFGALAKGPLNAHNLSADSLPFIDAHK FLAEGASSPLITGVMAFVTGIVTMIKVTRNMPKKLSNGTVHPGAMYYDEQMPRVMQPIVTQPAVPTVAVSEFMAVVKKMNEMEDKVTVLSNRPNLMPAEK EDLLNAALSRIDTLEEELAATKKNPTGPAVLTGPIGLTTNQIPV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10041779 [exp]	0	1
AT1G71250			GDSL-like Lipase/Acylhydrolase...		Lus10039152 [exp]	2.4	0.7314
AT3G09890			Ankyrin repeat family protein ...		Lus10022609 [exp]	9.2	0.6618
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	33.9	0.6847
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Lus10002196 [exp]	48.8	0.6168
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	62.3	0.6017
					Lus10009449 [exp]	63.6	0.5891
					Lus10029354 [exp]	116.7	0.6418
AT1G13710		CYP78A5, KLUH	KLUH, "cytochrome P450, family...		Lus10015788 [exp]	120.0	0.5958
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	181.6	0.6174
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10014724 [exp]	223.2	0.5996

Compare expression of checked genes

Lus10041779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.