Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66430 54 / 4e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04380 54 / 5e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 51 / 4e-08 JMT jasmonic acid carboxyl methyltransferase (.1) AT4G36470 51 / 6e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G11480 48 / 5e-07 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 44 / 1e-05 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G21950 42 / 8e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 41 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 40 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025993 [exp] 110 / 6e-29 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10036548 [exp] 88 / 9e-21 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 85 / 5e-20 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 78 / 2e-17 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 78 / 2e-17 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 75 / 3e-16 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 65 / 8e-13 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10041381 [exp] 54 / 4e-10 AT3G11480 47 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 40 / 0.0005 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021300 [exp] 102 / 2e-26 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 65 / 6e-13 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 65 / 9e-13 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022002 [exp] 64 / 2e-12 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022402 [exp] 63 / 4e-12 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G168232 [exp] 57 / 1e-10 AT1G19640 114 / 1e-30 jasmonic acid carboxyl methyltransferase (.1) Potri.005G230100 [exp] 50 / 1e-07 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.019G022200 [exp] 47 / 1e-06 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G045900 [exp] 44 / 2e-05 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.015G041900 [exp] 41 / 0.0002 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10041781 pacid=23146977 polypeptide=Lus10041781 locus=Lus10041781.g ID=Lus10041781.BGIv1.0 annot-version=v1.0 ATGTCTTATTGCATCATTTGGAAGACTTCAAAGAGTACTTTAGGCACTAAAGGGCGAGGCGAAGGGGGAGAGCACACCTGGAATCCTGGACTAGGATCCA AGATCTCTCCAGGTTCTACAAACTTCAACATCCCAGAATACATGCCGTCGCCCATGGAAGTGGAATCTGAGGTGAAGAATAAGGGGTCATTTGTCATAGA TGAGTTGGAGGTTTCTGAAGTGAGCTGGGACGCCCACAATGACGACGAGTACTTCAACATGGTATCTGGCGAAGCAACCAGAGCAAACAGCGTGGAGAAG TGCATTAGGGCGGTGGCGGAACCGCTGCAAGTCAACCACTCCGGTGGTGGGGAAGTAATGATCGACGAGGTGTTCGAGAGATACAGAGTCATTGCCTCGA AGCGTAAGGCCAATGATGAAAAGACTGGATTGTTCGTTTTTTTCACTGTGTCTCTCACCAATACTAGCTAG
AA sequence Show only first row Show all	>Lus10041781 pacid=23146977 polypeptide=Lus10041781 locus=Lus10041781.g ID=Lus10041781.BGIv1.0 annot-version=v1.0 MSYCIIWKTSKSTLGTKGRGEGGEHTWNPGLGSKISPGSTNFNIPEYMPSPMEVESEVKNKGSFVIDELEVSEVSWDAHNDDEYFNMVSGEATRANSVEK CIRAVAEPLQVNHSGGGEVMIDEVFERYRVIASKRKANDEKTGLFVFFTVSLTNTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10041781 [exp]	0	1

Compare expression of checked genes

Lus10041781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.