Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29250 317 / 1e-103 HXXXD-type acyl-transferase family protein (.1) AT5G02890 79 / 9e-16 HXXXD-type acyl-transferase family protein (.1) AT3G23840 79 / 2e-15 HXXXD-type acyl-transferase family protein (.1) AT4G13840 69 / 3e-12 HXXXD-type acyl-transferase family protein (.1) AT2G19070 58 / 8e-09 SHT spermidine hydroxycinnamoyl transferase (.1) AT4G24510 57 / 9e-09 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT3G26040 56 / 5e-08 HXXXD-type acyl-transferase family protein (.1) AT1G03390 55 / 5e-08 HXXXD-type acyl-transferase family protein (.1) AT1G24430 55 / 8e-08 HXXXD-type acyl-transferase family protein (.1) AT3G30280 54 / 1e-07 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028335 [exp] 752 / 0 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 69 / 2e-12 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10011003 [exp] 66 / 2e-11 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10000592 [exp] 64 / 8e-11 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10004360 [exp] 64 / 1e-10 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 62 / 4e-10 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 61 / 1e-09 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10005439 [exp] 58 / 7e-09 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10042433 [exp] 58 / 8e-09 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032700 [exp] 417 / 3e-143 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.013G039700 [exp] 183 / 3e-52 AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G052200 [exp] 174 / 5e-49 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 73 / 1e-13 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 71 / 4e-13 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.006G034066 [exp] 69 / 7e-13 AT3G26040 163 / 2e-47 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 69 / 3e-12 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G028000 [exp] 65 / 3e-11 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 65 / 4e-11 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G082100 [exp] 64 / 7e-11 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10041782 pacid=23146839 polypeptide=Lus10041782 locus=Lus10041782.g ID=Lus10041782.BGIv1.0 annot-version=v1.0 ATGGCAGCTGATCAACCAGTGACGTACATATGCAAGAGAACCGTGGTGAGCACCAAACCAGTCCAACCAGGGAAGAGGCATTCCCTGTCGGTCCTAGACC GGTTAATGGGAGATGAGAGCCACCTGAAGATAGTGTACTATCTTAGAACCCCACCTGACGGCTATGGACCTGGGGGGATCACCAAGATGCTCCGGGAATC TCTGGCCGAGACACTTACGTTCTTCCCGATAGTGACGGGCAGGCTTTTGAAAGAAGAAGACGGAAAGAGTTGGATGATCAAATGTAACGATGCAGGGGTT AGAATGGTGGAGGCCACTGCCAAAGGAAGTGTGGATCAATGGCTTGCTCATCTTGATAGGGAAAAGGAAATGAAGCTTGTCCATTGGGAGCCAATGTTCC ATAAGCCCTACTTTTGGTCCACTTTCTATCTACAGGTGTGTGAGGAGGGAGGCGTGGCAATCGGACTAAGCTGCTGCCATCTTTTGTTGGATCCAGTATG TGCCACTATGTTCATCAAAGCCTGGGCTGACATAACTTCACAAGGAAAATTGCTAGCTCCACCATTCTTCCACGCTCTGCCAACACCTAAGCCCATTCAC AACATCAGCAGCAAAAAAGCCACTAATAACAACTTGATCAACCACTACAAGAATATCAATGTAACATCTGATCAAACAACTCCTGAAGTCATGACTACTT CCGCCAGTCTATCCTTCTCGTTCACGGACTCAATGGTCCAATCATGCATGGACATGGCTCGGGCATCCACAGGGTCAAGTTCGCCTTCCCCCCTCGAGGC ACTATCCAGCCTCTTCTGGCTAATCCTGAGCAAAATAAAGTGTGGAACCACCATCGGTGGGCTAATGGATATGTCGATCTGTTTAGATGCTAGAAGTGTA TTGAGTCTGGACAAAGGATTTTTCGGGAATTGTATGGTCCGTAATAAAGTTGTGTATAGTTCAAGTGGTGACTCGTCCATGATAATGTCGTCATTAACAA ATGTAGCTGCTGCAATTGGAGAAGCCGTTGAAGAAATAATGGATCCAAGCTCGGTGATGGCCTTGATCGAGTGGCTGGAATACAACGATCATGAACATCA AGATCAAGTACTTAAGTCCCGGTCTTTAGGGAATGGTGGTGGTTCTGAGCTGGTTTGTATTGGATTGGAAGGCGTAGAGCCATACTCGGTGGGGTTTGGA GATGGATTCGAGCCGATTCAGGTGTCGTACCATGTTGAACCTATTGGAGAGAAATGGCATGTTTTGATTCTTCCGGGAAGAGGAGGAGATGGGCAGCTAG GCAGAGTGGTGATGGTGACAATTCCCATGGAGTTTGTGGGTAGTTTGTGTGGAGATGAAGTTATTCAGAGCTTGTCTCCAAGTATTGTAATGGGGGGATG A
AA sequence Show only first row Show all	>Lus10041782 pacid=23146839 polypeptide=Lus10041782 locus=Lus10041782.g ID=Lus10041782.BGIv1.0 annot-version=v1.0 MAADQPVTYICKRTVVSTKPVQPGKRHSLSVLDRLMGDESHLKIVYYLRTPPDGYGPGGITKMLRESLAETLTFFPIVTGRLLKEEDGKSWMIKCNDAGV RMVEATAKGSVDQWLAHLDREKEMKLVHWEPMFHKPYFWSTFYLQVCEEGGVAIGLSCCHLLLDPVCATMFIKAWADITSQGKLLAPPFFHALPTPKPIH NISSKKATNNNLINHYKNINVTSDQTTPEVMTTSASLSFSFTDSMVQSCMDMARASTGSSSPSPLEALSSLFWLILSKIKCGTTIGGLMDMSICLDARSV LSLDKGFFGNCMVRNKVVYSSSGDSSMIMSSLTNVAAAIGEAVEEIMDPSSVMALIEWLEYNDHEHQDQVLKSRSLGNGGGSELVCIGLEGVEPYSVGFG DGFEPIQVSYHVEPIGEKWHVLILPGRGGDGQLGRVVMVTIPMEFVGSLCGDEVIQSLSPSIVMGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10041782 [exp]	0	1
					Lus10011453 [exp]	5.3	0.9283
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10020865 [exp]	5.8	0.9622
					Lus10011249 [exp]	6.0	0.9161
					Lus10043138 [exp]	9.3	0.8585
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	10.1	0.9463
					Lus10018225 [exp]	12.5	0.9458
					Lus10009618 [exp]	14.3	0.9458
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	16.0	0.9458
					Lus10005830 [exp]	17.5	0.9458
AT1G13810			Restriction endonuclease, type...		Lus10012108 [exp]	18.8	0.8488

Compare expression of checked genes

Lus10041782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.