Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66390 486 / 4e-174 Peroxidase superfamily protein (.1) AT4G36430 460 / 8e-164 Peroxidase superfamily protein (.1) AT2G18150 447 / 7e-159 Peroxidase superfamily protein (.1) AT2G18140 422 / 5e-149 Peroxidase superfamily protein (.1) AT3G50990 406 / 2e-142 Peroxidase superfamily protein (.1) AT1G44970 387 / 6e-135 Peroxidase superfamily protein (.1) AT5G06720 323 / 6e-110 ATPA2 peroxidase 2 (.1) AT4G08770 313 / 1e-105 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT5G05340 311 / 2e-105 Peroxidase superfamily protein (.1) AT2G35380 309 / 3e-104 Peroxidase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028337 [exp] 423 / 5e-145 AT2G18150 354 / 7e-118 Peroxidase superfamily protein (.1) Lus10010634 [exp] 400 / 5e-140 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10034207 [exp] 330 / 8e-113 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10004163 [exp] 307 / 9e-104 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10025255 [exp] 299 / 2e-100 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10032786 [exp] 298 / 3e-100 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10009935 [exp] 297 / 6e-100 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10026748 [exp] 297 / 9e-100 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 296 / 9e-100 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118700 [exp] 542 / 0 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 537 / 0 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 386 / 1e-134 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 321 / 4e-109 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 319 / 3e-108 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.014G143200 [exp] 317 / 1e-107 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 315 / 1e-106 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 314 / 3e-106 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.013G154400 [exp] 313 / 4e-106 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.003G214800 [exp] 313 / 6e-106 AT5G06720 451 / 5e-160 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10041784 pacid=23146664 polypeptide=Lus10041784 locus=Lus10041784.g ID=Lus10041784.BGIv1.0 annot-version=v1.0 ATGGCTCGATCTGTTAGCTTTGTTTTCGTTGTTGTCTCTCTTCTAGCCTTCGCTCCATTTTGCTTGTGTGGTAAGAACATTGGTGGGTACCTTTACCCTC AGTTCTATGACTACTCTTGCCCTCAAGCTCACCAGATTGTCAAGTCTGTTGTGGCCAAGGCCGTTGCCAAAGAACCCCGGATGGCTGCTTCTTTGCTCAG GCTGCATTTCCATGACTGCTTCGTAAAGGGATGTGATGCTTCAATTCTGCTGGATGGCGGTTCAGGCATTGCAACTGAGAAGAACTCGAATCCGAATCGG AATTCTGCCAGAGGATTTGAAGTGATCGATGACATCAAGTCTGCATTGGAGAAGGAATGTCCTAACAAAGTTTCTTGTGCTGATATCCTGACCCTAGCTG CCAGAGACTCCACTGTACTTGCTGGAGGACCAAGCTGGGAGGTACCATTGGGGAGAAAGGACTCAAGAAGTGCAAGCTTGAGTGGTTCCAACAACAACAT TCCAGCTCCAAACAACACATTCCAGACAATCCTGACAAAGTTCAAGCTCCAAGGCCTCAACACTGTGGACCTTGTAGCATTGTCAGGAAGCCACACCATC GGGAATTCGAGGTGCACGAGCTTCCGGCAGAGGCTGTACAACCAGACGGGAAACGGCCTACCAGATTACAGCCTCGATTCCACCTATGCCTCCCAGATGA AAACCAGGTGCCCTCGTTCAGGAGGCGATCAGAACCTGTTCTTCTTGGATTTCCAGTCTCCGATGCATTTCGATAACAGCTACTTCAAGAACATATTGGC TTCTAAGGGGCTGCTCAACTCTGACCAGGTTCTCCTCACGAAGAATGAAGCATCCATGGAGTTGGTCAAGCAGTATGCTGAGAATAACGAGCTTTTCTTC CAGCAGTTTGCTAAGTCAATGGTTAAGATGGGAAATATCTCACCTTTGACTGGCTCCAAGGGAGAGATAAGGAAGAACTGCAGGAAGATGAATTAA
AA sequence Show only first row Show all	>Lus10041784 pacid=23146664 polypeptide=Lus10041784 locus=Lus10041784.g ID=Lus10041784.BGIv1.0 annot-version=v1.0 MARSVSFVFVVVSLLAFAPFCLCGKNIGGYLYPQFYDYSCPQAHQIVKSVVAKAVAKEPRMAASLLRLHFHDCFVKGCDASILLDGGSGIATEKNSNPNR NSARGFEVIDDIKSALEKECPNKVSCADILTLAARDSTVLAGGPSWEVPLGRKDSRSASLSGSNNNIPAPNNTFQTILTKFKLQGLNTVDLVALSGSHTI GNSRCTSFRQRLYNQTGNGLPDYSLDSTYASQMKTRCPRSGGDQNLFFLDFQSPMHFDNSYFKNILASKGLLNSDQVLLTKNEASMELVKQYAENNELFF QQFAKSMVKMGNISPLTGSKGEIRKNCRKMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	0	1
					Lus10008694 [exp]	1.4	0.9363
					Lus10008695 [exp]	2.0	0.8757
AT3G55310			NAD(P)-binding Rossmann-fold s...		Lus10006695 [exp]	20.2	0.8064
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	23.0	0.8550
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	25.1	0.8437
AT3G10330			Cyclin-like family protein (.1...		Lus10016260 [exp]	28.6	0.7482
					Lus10015758 [exp]	32.1	0.8554
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10033963 [exp]	33.8	0.7618
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10034860 [exp]	38.2	0.7636
					Lus10036826 [exp]	45.1	0.8323

Compare expression of checked genes

Lus10041784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.