Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36440 326 / 4e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028337 [exp] 583 / 0 AT2G18150 354 / 7e-118 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019400 [exp] 369 / 1e-126 AT4G36440 491 / 1e-173 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041785 pacid=23146893 polypeptide=Lus10041785 locus=Lus10041785.g ID=Lus10041785.BGIv1.0 annot-version=v1.0 ATGGATTCTTTCACCTGGTTATGCATCCTGCTTATAGCTGTACTGTTGCAGGTGTTATGCGCTGCTGCTGTTCCAGGATATATTGATTTTGGTCGGTTCA ATGAGCCTTACTCTTTCCACCCTGGTTCAGGACATGTGGACTTTGTTCAAGATTTTTACAACGGTGACCTTGTAAACTGCGAGAATAGTTATGATAAACT GGGACGCACTGCTAAGGTGAACCTCCTATGCGGAAGTTGCTTAAATGGAGCATGTAGAGGTGGACTTGGCTGCATATGCAATTTCACGTATGAGTCAAGT TGCAGGGTTATTATCGATCTTTCGATACCATGTGACAAACCAGGTCATCGTGTATTCCAAGGTTTCACTGTCGGATTCCACCCACGGACCTGGGAAATTG TCTACGATGGTCTTACTCAGCCAGGGTTTGAGAAGCCCAAGCAGGATTTTAGCTTTGACACAGAACAAAATGCTGTTGCCCTCTACATGACAGCAGTTGC TTCCCTTTCTGCTTTGGTGAAAAAACCCATAATTGAGGTTCATCCTGGTAAAGGCCTGGAGGTTAGATTGTCTGGGTCAGCGGCAAAAGCTACTCCTCCT ACAACTTTGTCACCGAGCATCTTGATTGTGGAATGGGAATGTCAGAGGGGTCGACGCACACCATATGAAATAAACGTCACAATACCTATTGACGGTTATG ATCCTATCCAGTTTTTTCTTACGAAAATGTGCGGTAAGCTCCCTCCCAATACTTGCCTTCTGCATGGAATTGATGCTTTGCCGGGAATGACAATCATATC TGCATGTTTAGAGACTGTAAGTGGCATGGGGCAAGGTTATGCCTACTCGCGAGCAGACGAGGTAAATAGTGGCTATGCTAGTGACGCCTCCTGGGATCGG ACTTTTGTATCGGCATCGGCATCTGCATCTGGATCTGCAGCTTCTTCAGCTCCAGCTCAAGGAAACTGGAGGCCCGGCACTGTAAGATACGGCTCAATTT AA
AA sequence Show only first row Show all	>Lus10041785 pacid=23146893 polypeptide=Lus10041785 locus=Lus10041785.g ID=Lus10041785.BGIv1.0 annot-version=v1.0 MDSFTWLCILLIAVLLQVLCAAAVPGYIDFGRFNEPYSFHPGSGHVDFVQDFYNGDLVNCENSYDKLGRTAKVNLLCGSCLNGACRGGLGCICNFTYESS CRVIIDLSIPCDKPGHRVFQGFTVGFHPRTWEIVYDGLTQPGFEKPKQDFSFDTEQNAVALYMTAVASLSALVKKPIIEVHPGKGLEVRLSGSAAKATPP TTLSPSILIVEWECQRGRRTPYEINVTIPIDGYDPIQFFLTKMCGKLPPNTCLLHGIDALPGMTIISACLETVSGMGQGYAYSRADEVNSGYASDASWDR TFVSASASASGSAASSAPAQGNWRPGTVRYGSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36440			unknown protein		Lus10041785 [exp]	0	1
AT5G06810			Mitochondrial transcription te...		Lus10039774 [exp]	15.8	0.6455
					Lus10041470 [exp]	41.0	0.6154
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10041428 [exp]	43.9	0.6184
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	49.8	0.6390
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	55.6	0.6319
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10003347 [exp]	107.4	0.5858
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10021630 [exp]	114.2	0.5554
					Lus10010599 [exp]	181.4	0.5575
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	258.8	0.5403
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	289.5	0.5317

Compare expression of checked genes

Lus10041785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.