Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52570 1087 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT3G15730 1085 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT5G25370 1050 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT2G42010 698 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 687 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11840 672 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 668 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11850 663 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G35790 662 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 589 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039806 [exp] 1090 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 1088 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10031634 [exp] 1083 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 1083 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10041855 [exp] 705 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 694 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 691 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 689 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 684 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253900 [exp] 1217 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.003G032800 [exp] 1106 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 1095 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.018G131200 [exp] 1066 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.005G246000 [exp] 737 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 736 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 722 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 714 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.005G105600 [exp] 701 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 701 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10041787 pacid=23146679 polypeptide=Lus10041787 locus=Lus10041787.g ID=Lus10041787.BGIv1.0 annot-version=v1.0 ATGGCGGGACGTCTACTACATGGCACCCTCGCTGCTACCATTTACGAGGTTGATAGCCTCAATCACGGATGTGGTTTCGACATGTTCTCTAAGTGTGATG GACCCCAAAATTTTGGGAGAAGGTTTCTCACAAAATTCAAGCGTGTAGTCCTTTGTCGACCCGAGGTGGTCGGGTCTGGATTGTATGCTACAGTTGACTT GGACAGGGCAAGAGTTGGAAGAACAAGACTAATCACAAAAGAGCCCTCAAATCCTAGGTGGTACGAATCATTTTGGATATACTGTGCTCACACAATCAAC CACGTCATCTTCACCATTAAAGAAGCCAATCCGGTCGGAGCCACTCTCATCGGAAGAGCTTACCTCCCTGTTGAGGACATCATCAAAGGCTACATCGTCG ACAAGTGGGTCCCCATCCTCGACGACTACGACAAAACCCCTCTCCCCGGGAACCCTCGAATCCACGTCAAACTTCAATTCTTCAATGTGATCTACGATCC CAACTGGTCTCAGGGAATCAAAACCCCCAAGTACGACGGAATTCATTACGCTTTCTTCAACCAAAGACACGGATGTCAGGTAACTCTGTATCAGGATGCT CATGTTCACGACAACTTCCTTCCAAATATTCACTTGGGACGAGATCGAATGTTGTACCGTGCTCACAGGTGTTGGGAGGATATCTTCGACGCCATAACTA ATGCGAGACATCTTATTTATATAACCGGATGGTCTGTCTATACTGAAATCACTCTCGTGAGGGATCCGAATCGGCCAATCCCCCCTGGAGGTGATATGAA GCTCGGGGAGTTGTTGAAGAAGAAAGCGGACGAGGGTGTAACGGTGTTATTGTTGGTTTGGGATGATATAACTTCGGTTTCGGAGTTTAAGAGGGATGGG TTAATGGCGACACATGATCAAGAAACGGCAGCATATTTTAAGGACACGAAAGTGAAATGTGTGCTGTGTCCTAGGAATCCTGATGGTGGAAGGAGTATAA TTCAAGGGTTCACAATCTCTACAATGTTCACCCATCATCAGAAATCTGTGGTTGTCGATGCTGCCGAAATTGATGCTTCGTCAGGAGGGAAAAGAAGAAT CGTGAGCTTCATTGGAGGGATTGATCTATGCGATGGGAGATACGATACGCAAGAGCATCCATTGTTCAAGACATTAGACACCACTCATCGCGACGACTTC CACCAGCCAAACTTTACAGAAGCGTCCATTAAAAAGGGCGGTCCACGAGAGCCGTGGCATGACATACATTGCAAATTGGAAGGTCCGGTGGCGTGGGACG TGCTTTATAACTTCGAGCAAAGGTGGATGAAGCAAGTTGCGGGTATCAACAATGCCCTATTAATCCCGCAGGAAAAACTCGAATCGTGGATTTCTCGCCC GTTACCTGTGGTGCAAGCTGACGATCCGGAGGCGTGGAATGTTCAAATATTCCGGTCCATAGACGGAGGAGCGGTTTCCGGGTTTCCTGAAAAGCCGGAG GAATCATGTGCGGTGGGGTTGATTAGTGGGAAAGACAATGTGATTGATAGAAGCATTCAAGATGCTTACATAAACGCCATCCGAAGGGCACAAAGCTTTA TATACATCGAAAATCAGTATTTTCTCGGAAGCTCATTCGGGTGGAAACAGATTAGCGGTGACATCAAAGTGGACGATATCGCTGCTTTACACCTCATTCC CAAAGAACTGTCGTTAAAGATTATTAGCAAGATCGAAGCAGAGGAGAGATTTACAGTGTATGTGGTGATCCCGATGTGGCCTGAAGGGATTCCGGAGAGC GACTCTGTTCAAGCAATATTGGATTGGCAGAAAAGGACTATGGAAATGATGTACTCCGACATAGCGGAAGCACTTAGAAAGAAAGGACTCAACACAAGTC CTAGAGAATACTTGACTTTTTTCTGCCTTGGAAGTAGAGAGACTAAGAAAATTGGTGAGTATACACCTTCTGAGACTCCTGAAGTTGGTTCGAGTTACGC TAGAGCGCAACAAGCTCGTCGTTTCATGATCTATGTTCATGCTAAGATGATGATTGTTGATGACGAGTACATAATCATTGGTTCGGCAAACATCAACCAG AGATCAATGGACGGAGGGAGAGACACCGAGATAGCAATGGGAGCATTCCAGCCGCAACATTTAGCAACGAATAACCAATTGGCGACGGGGCAAATCTACG GATTCAGAATAGCTTTATGGTATGAACATCTTGGGGTGCTTGAGAAGTCTTTCCAGTATCCAGCAAGTGTGCGATGCGTGCAGTTGGTGAACCAAGTTGC AGAGGACAATTGGGAGAAATACACGAGCGAGACTTTTGACCATGATCTTGTGGGTCACTTGCTTGCTTATCCCATTGAAGTTGCTAACAATGGAGCCGTC ACTAATTTGCCTGGGTTTGAGCATTTTCCAGACACCAAAGCTCTTGTGTTTGGCCACAAGTCTGATTATCTCCCTCCAATTCTCACCACTTAA
AA sequence Show only first row Show all	>Lus10041787 pacid=23146679 polypeptide=Lus10041787 locus=Lus10041787.g ID=Lus10041787.BGIv1.0 annot-version=v1.0 MAGRLLHGTLAATIYEVDSLNHGCGFDMFSKCDGPQNFGRRFLTKFKRVVLCRPEVVGSGLYATVDLDRARVGRTRLITKEPSNPRWYESFWIYCAHTIN HVIFTIKEANPVGATLIGRAYLPVEDIIKGYIVDKWVPILDDYDKTPLPGNPRIHVKLQFFNVIYDPNWSQGIKTPKYDGIHYAFFNQRHGCQVTLYQDA HVHDNFLPNIHLGRDRMLYRAHRCWEDIFDAITNARHLIYITGWSVYTEITLVRDPNRPIPPGGDMKLGELLKKKADEGVTVLLLVWDDITSVSEFKRDG LMATHDQETAAYFKDTKVKCVLCPRNPDGGRSIIQGFTISTMFTHHQKSVVVDAAEIDASSGGKRRIVSFIGGIDLCDGRYDTQEHPLFKTLDTTHRDDF HQPNFTEASIKKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWMKQVAGINNALLIPQEKLESWISRPLPVVQADDPEAWNVQIFRSIDGGAVSGFPEKPE ESCAVGLISGKDNVIDRSIQDAYINAIRRAQSFIYIENQYFLGSSFGWKQISGDIKVDDIAALHLIPKELSLKIISKIEAEERFTVYVVIPMWPEGIPES DSVQAILDWQKRTMEMMYSDIAEALRKKGLNTSPREYLTFFCLGSRETKKIGEYTPSETPEVGSSYARAQQARRFMIYVHAKMMIVDDEYIIIGSANINQ RSMDGGRDTEIAMGAFQPQHLATNNQLATGQIYGFRIALWYEHLGVLEKSFQYPASVRCVQLVNQVAEDNWEKYTSETFDHDLVGHLLAYPIEVANNGAV TNLPGFEHFPDTKALVFGHKSDYLPPILTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	0	1
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	1.0	0.9732
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	1.7	0.9584
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	2.4	0.9601
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	4.0	0.9573
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	4.5	0.9568
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	4.6	0.9555
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	4.9	0.9562
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	5.8	0.9412
AT1G20990			Cysteine/Histidine-rich C1 dom...		Lus10028723 [exp]	7.1	0.9125
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	7.9	0.9541

Compare expression of checked genes

Lus10041787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.