Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51000 362 / 3e-126 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 263 / 6e-87 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 251 / 1e-82 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 233 / 8e-75 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 228 / 7e-74 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 219 / 5e-70 ATSEH soluble epoxide hydrolase (.1) AT2G26750 211 / 7e-67 alpha/beta-Hydrolases superfamily protein (.1) AT5G53050 57 / 5e-09 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G36530 47 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G33180 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028340 [exp] 556 / 0 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 258 / 5e-85 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 241 / 2e-78 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 237 / 8e-77 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 227 / 7e-73 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 226 / 7e-73 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 225 / 4e-72 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 224 / 7e-72 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 224 / 9e-72 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018900 [exp] 446 / 4e-159 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 262 / 6e-87 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 258 / 7e-85 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 255 / 4e-84 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 252 / 6e-83 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 252 / 7e-83 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 249 / 7e-82 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 239 / 2e-77 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 188 / 4e-58 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 186 / 5e-57 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10041790 pacid=23147049 polypeptide=Lus10041790 locus=Lus10041790.g ID=Lus10041790.BGIv1.0 annot-version=v1.0 ATGGAAGCGAGAATAGAAGACGACGTGAATCACCAGCGAATAAAAACAAACGGGATATGGTTACATGTAGTGGAGAAAGGAATTAGTGGCCCTCTGGTTC TTCTCCTCCATGGCTTCCCAGATTTCTGGTATTCATGGCGTCACCAAATCACCTTCTTGGCCGACCGTGGTTACCACGTCGTCGCTCCTGACCTCAGAGG TTGTGGCGACTCCGACGCTCCCATCAACCATAGTTCTTACTCGCTTCTGCACATTGTAGGCGACATTGTTGGCCTCCTTGACCATTTTGGAGAACAGCAG GCCTTTGTGGTAGGGCATGACTGGGGAGCTTTAGCTGCTTGGTATCTAAGCATCTTCAGGCCTGAGAGGGAACCGGGAAGAGCAGAGCAGGCTTTTGCGA GATACGATTACCTGACAGTGATGAAGAAGTTCTTGCTGATAAACAAAACAGACGACAACTTGGTGGCTCCTATGGGGATGGAAATAATCGATTACTTGGA GACACCAGCAGTTTTGCCACCGTGGATCACTGAAGATGAACTGCAAATCTATGCCGATAAATTCCAGGAATCTGGTTTCACTGGTCCTCTCAACTACTAC CGTGCCATGGACCTGAACTGGGAGATCTCAGCACCCTGGCAAGGAGCAAAAGTTACAGTTCCAACAAAGTTCATGGTTGGAAATGAAGATATAGGTTTCA GGACTTCAGGTACCAAGCAATACATAGAAGGAGATACCTTCAGGAGCTTTGTTCCAGATCTTGAAGTTGTTGTTCTAGATGGTCACCACTTCATACATCA AGAGAAAGCTCAACAAGTTTCAGAAGAAATTGCTGCCTTTCTCCATAAGCATTCTTTACAATCAGAATAG
AA sequence Show only first row Show all	>Lus10041790 pacid=23147049 polypeptide=Lus10041790 locus=Lus10041790.g ID=Lus10041790.BGIv1.0 annot-version=v1.0 MEARIEDDVNHQRIKTNGIWLHVVEKGISGPLVLLLHGFPDFWYSWRHQITFLADRGYHVVAPDLRGCGDSDAPINHSSYSLLHIVGDIVGLLDHFGEQQ AFVVGHDWGALAAWYLSIFRPEREPGRAEQAFARYDYLTVMKKFLLINKTDDNLVAPMGMEIIDYLETPAVLPPWITEDELQIYADKFQESGFTGPLNYY RAMDLNWEISAPWQGAKVTVPTKFMVGNEDIGFRTSGTKQYIEGDTFRSFVPDLEVVVLDGHHFIHQEKAQQVSEEIAAFLHKHSLQSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	0	1
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	1.4	0.9358
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	2.8	0.9211
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	3.5	0.9211
AT2G04305			Magnesium transporter CorA-lik...		Lus10020472 [exp]	4.9	0.8920
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	6.2	0.9301
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	9.5	0.9031
AT5G58300			Leucine-rich repeat protein ki...		Lus10039422 [exp]	9.8	0.8668
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	11.5	0.8934
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	12.2	0.8945
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	14.1	0.9129

Compare expression of checked genes

Lus10041790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.