Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75440 246 / 9e-85 UBC16 ubiquitin-conjugating enzyme 16 (.1) AT5G42990 241 / 1e-82 UBC18 ubiquitin-conjugating enzyme 18 (.1) AT1G45050 238 / 2e-81 ATUBC2-1, UBC15 Arabidopsis thaliana ubiquitin-conjugating enzyme 15, Ubiquitin-conjugating enzyme family protein (.1) AT4G36410 228 / 2e-77 UBC17 ubiquitin-conjugating enzyme 17 (.1) AT2G16740 67 / 2e-14 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT3G08690 66 / 6e-14 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G53300 64 / 3e-13 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 64 / 4e-13 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT4G27960 63 / 6e-13 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 62 / 9e-13 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028341 [exp] 227 / 2e-77 AT1G75440 250 / 8e-87 ubiquitin-conjugating enzyme 16 (.1) Lus10032352 [exp] 68 / 1e-14 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10033937 [exp] 68 / 1e-14 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10028700 [exp] 67 / 1e-14 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 67 / 1e-14 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10027570 [exp] 66 / 4e-14 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 66 / 4e-14 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 66 / 4e-14 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 66 / 4e-14 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G030800 [exp] 266 / 8e-93 AT5G42990 251 / 9e-87 ubiquitin-conjugating enzyme 18 (.1) Potri.005G118600 [exp] 261 / 8e-91 AT1G75440 296 / 1e-104 ubiquitin-conjugating enzyme 16 (.1) Potri.007G018700 [exp] 259 / 7e-90 AT1G75440 295 / 3e-104 ubiquitin-conjugating enzyme 16 (.1) Potri.005G232100 [exp] 250 / 4e-86 AT5G42990 256 / 1e-88 ubiquitin-conjugating enzyme 18 (.1) Potri.015G023300 [exp] 68 / 1e-14 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.012G033000 [exp] 68 / 1e-14 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 68 / 1e-14 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G083800 [exp] 65 / 1e-13 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.016G138900 [exp] 65 / 2e-13 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 64 / 2e-13 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10041791 pacid=23146760 polypeptide=Lus10041791 locus=Lus10041791.g ID=Lus10041791.BGIv1.0 annot-version=v1.0 ATGACCAGTTCCTCCGCCACCGCTCGCAAGACACTGAGTAAGATCGCTTGCAATCGGCTTCAGAAGGAGTTGGTGGAGTGGCAGGTCAATCCAAGGGGTT GGTGGAGTGGCAGGTGGGTGATTGAAGTAAATGGAGCTCCTGGAACCCTCTATGCTAATGAAATGTACCAGCTCCAAGTTGATTTCCCTGAGCATTACCC AATGGAAGCGCCCCAGGTTATATTTCTTCATCCAGCTCCACTACACCCTCACATTTACAGCAACGGCCATATTTGTTTAGAACAGTGTTCGATTGTCAAA GAAAAGCTTACACCAATGAATTTACTCCTCGCAGATATATTATACGATTCTTGGTCACCTGCTATGACTGTTAGTTCTGTGTGTATCAGCATCCTTTCAA TGCTGTCAAGCTCAACTGTTAAGCAACGCCCTGAAGACAATGATCGCTATGTGAAGAACTGCCGAAACGGAAGATCTCCGAAGGAGACCAGGTGGTGGTT CCATGATGACAAGGTGTAA
AA sequence Show only first row Show all	>Lus10041791 pacid=23146760 polypeptide=Lus10041791 locus=Lus10041791.g ID=Lus10041791.BGIv1.0 annot-version=v1.0 MTSSSATARKTLSKIACNRLQKELVEWQVNPRGWWSGRWVIEVNGAPGTLYANEMYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLEQCSIVK EKLTPMNLLLADILYDSWSPAMTVSSVCISILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10041791 [exp]	0	1
AT2G28060			5'-AMP-activated protein kinas...		Lus10008427 [exp]	7.1	0.8625
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	8.2	0.8616
AT3G56720			unknown protein		Lus10038984 [exp]	8.5	0.8566
AT1G24095			Putative thiol-disulphide oxid...		Lus10030833 [exp]	9.5	0.8275
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	11.5	0.8405
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	23.5	0.8375
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	24.5	0.8519
AT2G31130			unknown protein		Lus10000990 [exp]	33.6	0.8141
AT1G49170			Protein of unknown function (D...		Lus10020853 [exp]	33.9	0.7596
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	35.8	0.8336

Compare expression of checked genes

Lus10041791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.