Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36400 685 / 0 D2HGDH D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) AT5G06580 137 / 2e-34 FAD-linked oxidases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028342 [exp] 949 / 0 AT4G36400 788 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10012289 [exp] 135 / 1e-33 AT5G06580 825 / 0.0 FAD-linked oxidases family protein (.1) Lus10015987 [exp] 132 / 8e-33 AT5G06580 777 / 0.0 FAD-linked oxidases family protein (.1) Lus10005317 [exp] 46 / 5e-05 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10026471 [exp] 44 / 0.0003 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10039574 [exp] 43 / 0.0005 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018600 [exp] 734 / 0 AT4G36400 817 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Potri.016G064800 [exp] 133 / 3e-33 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1) Potri.016G040300 [exp] 51 / 1e-06 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF02913 [flax] [poplar] FAD-oxidase_C FAD linked oxidases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041792 pacid=23146673 polypeptide=Lus10041792 locus=Lus10041792.g ID=Lus10041792.BGIv1.0 annot-version=v1.0 ATGGCAGAGAAGTATAGAGCAACGGCTCCTTTGCTCAGGAAAACTTCGAGATCATTTCATGGCGGCGGATTTACTGCTTTTGGTTATACCGATTGGTTTG AAGCAGGGCGTGATCAATGCGTATCTTATCGTGGATGTAAAAAGCGGGGTTTATGGAGTTCTGCACGATCTTTCGCTGGACACTGTGTAGCTTCTCCTTC CAATTTTACGGACCGAGGTTTCACGAGAGATTACTTCATGGGTCACCAGAGAAGCTTTGGTGCGGATGAGAGACTAGAAGCTGCAAATAATGATTGGATG CAGAAATACAAAGGATCGAGTAGGCTTCTTTTGCTTCCTAAGTCCACAAATGAGGTTTCGAAAGTTCTTAAATATTGCAATTCAAGGTGCTTAGCTGTTG TTCCACAAGGTGGAAATACTGGACTTGTGGGCGGCAGTGTGCCAGTATTTGATGAGGTGATCATAAATATGGCTTTAATGAATAAAGTAATATCTTTTGA CGAGACCAGTGGCATACTAGTGTGTGAAGCTGGATGCATACTTGAGGATCTGATCTCCTACCTCGATAACCAGGGATTTATTATGCCACTCGACTTAGGT GCAAAAGGAAGCTGTCAAATTGGTGGGAACGTGGCAACCAATGCTGGGGGTTTGCGTCTTGTTCGCTATGGTTCACTTCATGGGACTGTACTTGGTCTGG AGACTGTACTAGCAAATGGTGATGTATTGGACATGCTTGGAACATTACGGAAAGATAATACTGGTTATGACTTGAAACATTTGTTTATAGGAAGTGAAGG CTCCTTAGGAATTATTACTAAAGTTTCAATACTCACGCCTCCAAAGCTCGCTTCGGTTAATATAGCTTTCCTTGCTTGTGAAGATTATCTGAGCTGTCAG AAACTTCTACTGGAAGCAAAGAGGAATCTTGGGGAGATTTTATCTGCCTTTGAATTTTTGGACAGTGTCGCAATGGATGTGGTTCTAAACAATCTAGATG GTGCAAGAAACCCACTTGCTCCCTCAAAACACAACTTCTATGTTCTGATTGAGACAACAGGCAGTGAAGAATCCTATGACACAGAGAAGATTGAGAAATT CCTACTTGGATCAATGGAATCTGGTTTAGTTTCTGATGGCGTTCTTGCACAAGATATAAACCAGGCTTCTGCATTCTGGCATTTACGTGAGGGTATACCT GAATCCTTGCAGAGGGCAGGCGCTGTTTACAAATATGATCTATCGTTGCCGGTTGAGAAAATGTATGATATAGTTGAAGAAATGAGAGAGAGATTAGGTG ATTCAGTGAAAGTGGTGGGGTATGGTCATCTCGGTGACGGAAATTTACATCTCAATGTTTCAGCCCTGAAATACGATGATGCAATATTAGCACAAATTGA GCCCTTTGTCTATGAATGGACATCTAAGCACCATGGGAGTATAAGCGCAGAGCATGGCGTTGGACTGATGAAGGCTAACAAAATATTCTACAGCAAATCA CATGAAACTCTGAAGGTAACGATTCCTGGACCTCCTGGTGAATGCTCGCTGATATTTCCATCCTTATCTCATTCATGGAAAAATGCAAAGGCAACGAATC AGACCAATAAATGA
AA sequence Show only first row Show all	>Lus10041792 pacid=23146673 polypeptide=Lus10041792 locus=Lus10041792.g ID=Lus10041792.BGIv1.0 annot-version=v1.0 MAEKYRATAPLLRKTSRSFHGGGFTAFGYTDWFEAGRDQCVSYRGCKKRGLWSSARSFAGHCVASPSNFTDRGFTRDYFMGHQRSFGADERLEAANNDWM QKYKGSSRLLLLPKSTNEVSKVLKYCNSRCLAVVPQGGNTGLVGGSVPVFDEVIINMALMNKVISFDETSGILVCEAGCILEDLISYLDNQGFIMPLDLG AKGSCQIGGNVATNAGGLRLVRYGSLHGTVLGLETVLANGDVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIITKVSILTPPKLASVNIAFLACEDYLSCQ KLLLEAKRNLGEILSAFEFLDSVAMDVVLNNLDGARNPLAPSKHNFYVLIETTGSEESYDTEKIEKFLLGSMESGLVSDGVLAQDINQASAFWHLREGIP ESLQRAGAVYKYDLSLPVEKMYDIVEEMRERLGDSVKVVGYGHLGDGNLHLNVSALKYDDAILAQIEPFVYEWTSKHHGSISAEHGVGLMKANKIFYSKS HETLKVTIPGPPGECSLIFPSLSHSWKNAKATNQTNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	1.0	0.9011
					Lus10030083 [exp]	2.0	0.8644
AT5G10320			unknown protein		Lus10000634 [exp]	6.5	0.8221
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	6.7	0.8275
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	6.9	0.8653
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	7.5	0.8694
					Lus10019158 [exp]	7.9	0.8409
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	9.2	0.8466
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	9.2	0.8525
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	9.8	0.8275

Compare expression of checked genes

Lus10041792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.