Plant FIBer expression Database

Lus10041793 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36390 910 / 0 Methylthiotransferase (.1)
AT1G72090 127 / 8e-31 Methylthiotransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028344
[exp]
1221 / 0 AT4G36390 908 / 0.0 Methylthiotransferase (.1)
Lus10016926
[exp]
116 / 5e-27 AT1G72090 787 / 0.0 Methylthiotransferase (.1)
Lus10008262
[exp]
86 / 3e-17 AT1G72090 658 / 0.0 Methylthiotransferase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G018500
[exp]
961 / 0 AT4G36390 864 / 0.0 Methylthiotransferase (.1)
Potri.013G107800
[exp]
136 / 1e-33 AT1G72090 847 / 0.0 Methylthiotransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF01938 TRAM TRAM domain
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0304 CheY PF00919 UPF0004 Uncharacterized protein family UPF0004
Representative CDS sequence
>Lus10041793 pacid=23146973 polypeptide=Lus10041793 locus=Lus10041793.g ID=Lus10041793.BGIv1.0 annot-version=v1.0
ATGGCGTCTTCGTCGCTATCATCGCTCACGGCGATTCTGCAAAAACCTCACCGTGCCATCTCCATTCAACGACAATGCTGCTGCTTAACTCTGAACATTT
TCTCCTCCAATCCCACCCGAGCGGCGTATACTTACCGCCATTGGAGTCACCGCCAGCTGAAAGGAAGGAGCTTTGCTCTAAATCCCTCCAGAAGATTTTC
CCAGTCGCATCTACCTACTTCAGCAAAATCCGAAGGTCCCGGGCTCCATCACTTCATTGCCCGAGCAGCTCTCTCCGCTCCGCAGACTCAGCCTGATCTT
ATTGCAACTACTGAAGTTCGATTAGAAGAATCAGAAACTCCTGCTAAAGGACGTATTTATCACGAGACATATGGTTGCCAAATGAATATCAATGATATGG
AGGTGGTGTTATCCGTTATGAAGAATGCTGGGTATAATGAAACTGTGGATAACCCAGAAGCTGCTGAGATCATATTTATAAATACATGCGCCATCCGGGA
CAATGCGGAGCAAAAGGTGTGGCAGAGGCTTAATTACTTTTGGTTTCTAAAGAGACGCTGGAAGAGCAATGTTGCTCAAGGAAGGGCCGAGTCAATTCGC
CCTCCCAAGGTGGTCGTGTTAGGATGCATGGCTGAGAGGTTGAAGGAGAAGATACTGGATTCAGATAAGATGGTTGATGTGGTCTGTGGACCTGATGCAT
ATAGAGATTTGCCTAGGTTGCTTGAAGAAGTGGACTATGGTCAAAAGGGGATCAATACTCTTCTTTCACTCGAGGAGACTTACGCGGATATCAGTCCAGT
TCGAATCATGAAGAATTCAGTTACTGCATTTGTCTCTGTGATGAGGGGCTGTAACAACATGTGTTCGTTCTGTATAGTTCCGTTCACGAGAGGGAGAGAG
CGCTCACGTCCAGTGGATTCGATCGTGAAGGAGGTTGGAGAGCTCTGGGAAGAAGGAGTGAAAGAGGTAACTCTTCTCGGCCAGAATGTGAACAGCTACA
ACGATGAATCCGGGATTGAACAGGAACTTGAAGCCGGTTCCAATTGGGAATATAGTGAAGGGTTCTCCAGCATGTGCAAAGTTAAAAAAGTGGGTTTACG
CTTTTCAGATCTCCTCGATCGGCTTTCCACTGAATTCCCAGAGATGCGGTTCAGATACACATCACCTCATCCTAAAGATTATCCGGATGACTTGCTCCGT
GTAATGAGGGATAGGCATAATGTATGCAATTACATTCATTTACCAGCACAAAGTGGAAGTAGCAGAATGATAGAAAGAATGCGCCGTGGGTACACCAGAG
AGGCATATTTGGAACTTGTGGAGAAAATTAGGAGAACTATTCCGGATGTCGGATTGAGCAGTGATTTCATATGCGGTTTCTGCGGAGAAACAGAAGAAGA
CCACAAAGAAACTCTAAGCCTCGTTAGAACTGTCGGTTACGATATGGCCTTCATGTTTGCATACAGCATGAGAGAGAAGACCCATGCACACAGAAACTAC
GATGATGATGTGCCCGAGGATGTCAAGCAGAGGAGACTCACGGAGCTTATCGAGGTATTCCGTGAAACCACAGGTCAGTGTTACGACTCCCAAATCGGAA
CTGTCCAGCTTGTCTTAGTTGAAGGACCCAACAGAAGAGCTCCCGACACAGAACTTATTGGCAAGACTGATAGAGGCCATAGAGTTTCCTTTGTCAAGCT
ACCTTTGCCAGATCGAACTGGAGATGGTAGTAACGATCAGCAGCGTGATCCTGTTGTGGGTGACTATGTGGAAGTTCGGATATCGAAATCCACTCGAGCC
TCGCTTTACGGAGAAGCACTTGCCATCACTAAGTTGAGCTTGTTTTACAGCAACGCAGCAGCGGAGCTAGAGGCTGTCGCCTGCACAGCTTGA
AA sequence
>Lus10041793 pacid=23146973 polypeptide=Lus10041793 locus=Lus10041793.g ID=Lus10041793.BGIv1.0 annot-version=v1.0
MASSSLSSLTAILQKPHRAISIQRQCCCLTLNIFSSNPTRAAYTYRHWSHRQLKGRSFALNPSRRFSQSHLPTSAKSEGPGLHHFIARAALSAPQTQPDL
IATTEVRLEESETPAKGRIYHETYGCQMNINDMEVVLSVMKNAGYNETVDNPEAAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRRWKSNVAQGRAESIR
PPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRIMKNSVTAFVSVMRGCNNMCSFCIVPFTRGRE
RSRPVDSIVKEVGELWEEGVKEVTLLGQNVNSYNDESGIEQELEAGSNWEYSEGFSSMCKVKKVGLRFSDLLDRLSTEFPEMRFRYTSPHPKDYPDDLLR
VMRDRHNVCNYIHLPAQSGSSRMIERMRRGYTREAYLELVEKIRRTIPDVGLSSDFICGFCGETEEDHKETLSLVRTVGYDMAFMFAYSMREKTHAHRNY
DDDVPEDVKQRRLTELIEVFRETTGQCYDSQIGTVQLVLVEGPNRRAPDTELIGKTDRGHRVSFVKLPLPDRTGDGSNDQQRDPVVGDYVEVRISKSTRA
SLYGEALAITKLSLFYSNAAAELEAVACTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G36390 Methylthiotransferase (.1) Lus10041793
[exp]
0 1
AT4G36390 Methylthiotransferase (.1) Lus10028344
[exp]
1.0 0.9496
AT1G48520 GATB GLU-ADT subunit B (.1.2.3) Lus10030559
[exp]
2.2 0.9290
AT1G16790 ribosomal protein-related (.1) Lus10033346
[exp]
4.0 0.9290
AT1G48350 EMB3105 EMBRYO DEFECTIVE 3105, Ribosom... Lus10039092
[exp]
9.8 0.9370
AT3G12110 ACT11 actin-11 (.1) Lus10001693
[exp]
10.0 0.9188
AT3G15190 chloroplast 30S ribosomal prot... Lus10041925
[exp]
10.4 0.9277
AT1G71920 HISN6B HISTIDINE BIOSYNTHESIS 6B (.1.... Lus10005564
[exp]
10.6 0.8820
AT2G43030 Ribosomal protein L3 family pr... Lus10013640
[exp]
10.7 0.9290
AT2G43030 Ribosomal protein L3 family pr... Lus10001337
[exp]
17.5 0.9276
AT3G46610 Pentatricopeptide repeat (PPR-... Lus10014577
[exp]
17.7 0.9187

Lus10041793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.