Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36380 634 / 0 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 477 / 2e-165 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 325 / 4e-106 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G50660 306 / 1e-98 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G38970 261 / 1e-81 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 259 / 3e-80 Cytochrome P450 superfamily protein (.1) AT1G12740 257 / 6e-80 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 251 / 9e-78 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 249 / 4e-77 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 236 / 4e-72 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028345 [exp] 944 / 0 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 335 / 5e-110 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 328 / 2e-107 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10006152 [exp] 281 / 2e-90 AT3G13730 378 / 2e-128 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Lus10024495 [exp] 271 / 2e-85 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10016065 [exp] 268 / 6e-84 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10030404 [exp] 254 / 3e-80 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014240 [exp] 252 / 3e-78 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10000647 [exp] 252 / 4e-78 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018400 [exp] 654 / 0 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 516 / 0 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 516 / 1e-180 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.010G189800 [exp] 339 / 9e-112 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 338 / 2e-111 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G026500 [exp] 303 / 1e-97 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 298 / 1e-95 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G156800 [exp] 278 / 5e-88 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.001G109100 [exp] 266 / 2e-83 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G122500 [exp] 263 / 2e-82 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041794 pacid=23146831 polypeptide=Lus10041794 locus=Lus10041794.g ID=Lus10041794.BGIv1.0 annot-version=v1.0 ATGCTGAATTTGGAGATGTCGTCGGAAGGGATGTGGTGGTCGGTAGGATCAGTGATTCTCGCCGTCTTCTTTGGAGCAGCTCTTCCGCTCTACTGGTGGC GGCGCCGGCTACCCACGGCGGCGTCGTCGTCGGAGGCCGTTGTGCCGAGAGGGAATTTGGGATGGCCTTTGATCGGAGAGACTCTTGACTTTATCGCCTG CGGATACACTTCTCGCCCTGTTTCTTTCATGGACACTCGCAAATCTCTATATGGGAATGTATTCAAATCGAACATACTGGGAACTCCGATAATCGTATCC ACCGATCCGGAAGTGAACAAAGTAGTGTTACAGAACCATGGAAACAACTCATTCATCCCGGCTTACCCTAAATCGATCCGCGAAATATTCGGCAAAGAGT CCATTCTACAAACCAATGGTCCTATGCAGAAGAAAGTCCACGGCTTGATCGGTGGGTTCTTGAGATCCCCTCAGTTCAAAGCCAGAATCGCCAAGGACAT CGAGGACTCTGTGAAGTTCACTTTGGACACTTGGAAGGACTTACCCGTCGTTTATGTCCAGGATGAAATAAAAAAGGTCTTGATGACGTTCAAAGTGCTG GTGAAAGCTCTGATTAGCGTCGGGCCAGGGGCAGATTTGGAATTCATGAAATCTGAATTTGAGGAGCTTATCAAAGGCTTAATCTGCTTCCCCATCAAAG TCCCTGGAACCACTCTTTACAAGTCATTGAAGGCGAGAGAGAGGTTGTTGAAGTTTGTGAGGAGAAAGGTGGACGAAAGGAAAAGCAAAACGACGACGGA CGAGGGTCCACGGGATGCAGTGGACGTGCTGCTAGGGGAAAAAGAGGAGAAACAACAACAACAAATGCTGTCGTTGGATTTCATAAGCGGGAACGTGTTG GAGATGATGATCCCAGGGGAAGAGACGGTGCCGACGGCGATGACGTTAGCTGTCAAGTTCTTGAGTGATTATCCACGCGCTTTAGCCCAACTAACGGAGG AGAACTTGGTTTTGAAGAGGCAGAAGGAAGAGTTGGGTGAGGAGTATACGTGGACTGACTACGTGTCCTTGCCATTTACTCAGAATGTGATCAGTGAGAC ACTAAGAATGGCAAATATCATTAATGGGGTTTGGAGGAAAGCTCTAAAAAATGTGGAAATTAAAGGACATTTGATTCCGAAAGGATGGTGTGTTTTGGCA TCTTTCACCTCTGTTCATATGAATGAAGATAACTACCAACACCCTTACGAATTCAATCCATTGAGATGGGAGCAAAAGGGAGCTTCAGTAAACAACAATT GCTACACACCATTTGGTGGAGGGCAAAGGCTATGCCCTGGTTTGGAGCTGTCCAGGCTTGAAATCTCTATTTTCCTTCACCACCTAGTCACCACTTACAA ATGGAGTGCTGAGAAGGATGACATCGTCTACTTTCCAACTGTGAAGATGAAGAGGAAGATGCCCATCACTGTCACACCTTTTAATACATAA
AA sequence Show only first row Show all	>Lus10041794 pacid=23146831 polypeptide=Lus10041794 locus=Lus10041794.g ID=Lus10041794.BGIv1.0 annot-version=v1.0 MLNLEMSSEGMWWSVGSVILAVFFGAALPLYWWRRRLPTAASSSEAVVPRGNLGWPLIGETLDFIACGYTSRPVSFMDTRKSLYGNVFKSNILGTPIIVS TDPEVNKVVLQNHGNNSFIPAYPKSIREIFGKESILQTNGPMQKKVHGLIGGFLRSPQFKARIAKDIEDSVKFTLDTWKDLPVVYVQDEIKKVLMTFKVL VKALISVGPGADLEFMKSEFEELIKGLICFPIKVPGTTLYKSLKARERLLKFVRRKVDERKSKTTTDEGPRDAVDVLLGEKEEKQQQQMLSLDFISGNVL EMMIPGEETVPTAMTLAVKFLSDYPRALAQLTEENLVLKRQKEELGEEYTWTDYVSLPFTQNVISETLRMANIINGVWRKALKNVEIKGHLIPKGWCVLA SFTSVHMNEDNYQHPYEFNPLRWEQKGASVNNNCYTPFGGGQRLCPGLELSRLEISIFLHHLVTTYKWSAEKDDIVYFPTVKMKRKMPITVTPFNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	0	1
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	1.0	0.9490
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	2.0	0.9104
AT1G16220			Protein phosphatase 2C family ...		Lus10027122 [exp]	3.5	0.9028
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	4.4	0.8822
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	4.6	0.9015
					Lus10025501 [exp]	4.7	0.9238
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	6.0	0.8830
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	7.5	0.8866
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	7.5	0.9216
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	7.7	0.8933

Compare expression of checked genes

Lus10041794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.