Plant FIBer expression Database

Lus10041795 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51010 143 / 2e-43 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026320
[exp]
300 / 3e-105 AT3G51010 176 / 2e-56 unknown protein
Lus10028346
[exp]
296 / 1e-103 AT3G51010 172 / 7e-55 unknown protein
Lus10042347
[exp]
293 / 1e-102 AT3G51010 170 / 5e-54 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G018300
[exp]
144 / 2e-44 AT3G51010 94 / 6e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10041795 pacid=23146744 polypeptide=Lus10041795 locus=Lus10041795.g ID=Lus10041795.BGIv1.0 annot-version=v1.0
ATGGGATTTGGAGCTTTCAGAAGTATCGTTCGGCCGGTGGCTAGGGTGCTGACGTCCGGCGCCACCACTTCTTACTCGACGTCGTTGCTGGGAAAAGCTC
CGTTTCCGCGATCCGAGTGGAGATTGGCTCTCATCCCTCAGGCTCCACCAGTATCCTCCCAGCTATTGCGCCATTTCAGTTTCTTTTCGGAGTCTGGTTA
CGACAGGTTAACAGACACGAGGTTGCCAAAGCGCCGGCCGCTCGACAAACCTCACCGGAAAAGAGCTGGCTTGAGACCTGCTGGAGCATTTGCTTGGGTC
AAGTATGAGGCTGGAGAGCCGATTAAACCCAGTAACCCTAATGAAGGAAGTGTTAAGAAAAGGAATGAGAAGAAACGTAGAATGTTGCACCGAGAATTCG
TAAAGTCTGAGTCGAAAAAGAGGAAAGCTCTGTTACAGGCAGCTAACAGGAAGAAAATGGCCGCAAGAGTGGACCGTAAAATGGCTGCTGTGGCAAGGGA
TAGAGCATGGGCAGAAAGATTAGCTGAACTGCAGCGACTTGAAGCGGAAAAGAAAAACTCCACATCTTAG
AA sequence
>Lus10041795 pacid=23146744 polypeptide=Lus10041795 locus=Lus10041795.g ID=Lus10041795.BGIv1.0 annot-version=v1.0
MGFGAFRSIVRPVARVLTSGATTSYSTSLLGKAPFPRSEWRLALIPQAPPVSSQLLRHFSFFSESGYDRLTDTRLPKRRPLDKPHRKRAGLRPAGAFAWV
KYEAGEPIKPSNPNEGSVKKRNEKKRRMLHREFVKSESKKRKALLQAANRKKMAARVDRKMAAVARDRAWAERLAELQRLEAEKKNSTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51010 unknown protein Lus10041795
[exp]
0 1
AT3G43590 zinc knuckle (CCHC-type) famil... Lus10013378
[exp]
16.7 0.7910
AT3G15630 unknown protein Lus10017768
[exp]
20.9 0.7312
AT5G03070 IMPA-9 importin alpha isoform 9 (.1) Lus10008480
[exp]
23.5 0.7683
AT1G17370 UBP1B oligouridylate binding protein... Lus10008130
[exp]
30.3 0.7728
AT3G52890 KIPK KCBP-interacting protein kinas... Lus10008634
[exp]
32.2 0.7756
AT4G04930 DES-1-LIKE fatty acid desaturase family p... Lus10018485
[exp]
39.7 0.7527
AT1G24360 NAD(P)-binding Rossmann-fold s... Lus10015821
[exp]
57.9 0.7210
AT5G57480 P-loop containing nucleoside t... Lus10006968
[exp]
63.3 0.6810
AT3G20290 ATEHD1 EPS15 homology domain 1 (.1.2) Lus10032563
[exp]
70.6 0.6966
AT5G62350 Plant invertase/pectin methyle... Lus10038914
[exp]
72.4 0.7097

Lus10041795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.