Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11520 459 / 2e-160 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT4G00330 341 / 4e-115 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 341 / 2e-114 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT3G46290 239 / 9e-72 HERK1 hercules receptor kinase 1 (.1) AT5G59700 236 / 2e-70 Protein kinase superfamily protein (.1) AT1G10620 232 / 9e-70 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT2G39360 231 / 5e-69 Protein kinase superfamily protein (.1) AT1G70460 228 / 2e-68 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G30570 230 / 3e-68 HERK2 hercules receptor kinase 2 (.1) AT4G39110 229 / 5e-68 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028347 [exp] 623 / 0 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 571 / 0 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 552 / 0 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018828 [exp] 352 / 4e-119 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 347 / 2e-117 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 349 / 1e-116 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 325 / 3e-108 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10014760 [exp] 332 / 2e-104 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10018203 [exp] 326 / 4e-103 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064200 [exp] 555 / 0 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 551 / 0 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.014G087200 [exp] 346 / 9e-117 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 341 / 8e-115 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 328 / 1e-109 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.010G213200 [exp] 241 / 1e-72 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.001G204000 [exp] 230 / 1e-72 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 241 / 2e-72 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.017G096400 [exp] 232 / 2e-72 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.001G234200 [exp] 240 / 4e-72 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041796 pacid=23146688 polypeptide=Lus10041796 locus=Lus10041796.g ID=Lus10041796.BGIv1.0 annot-version=v1.0 ATGTGTTGTGGTCTGCTATGCCATTGTATTTACAAGAGAAGAAAGGCAACTTCTCGCAATGTTCATTCCAAGGATCACATTCCAACGGAGTCGGCTTCTT GTTTAGAGCAAGCACCTTCTGTCCATGAAAAAGTGCCTGCAAGCCCACTTCGTGTGCCACCTAGTCCTTCTAGATTCTCTCCATCCCCAAAACTTTCTAG ACTTGGGTCTGTTCATCTCAACCTGAGTCAAGTTTCCAGAGCTACGCGTCATTTTTCCGAGTCACTGAAGATTGGGGAAGGAGGCTTTGGATGCGTGTAC AAAGCACAACTGGACGATGGACAGATAGTTGCAATAAAACGAGCCAAAAAGGAACATTTTGAGAACTTGCGAGCAGAATTCAGCAGTGAAGTTGAACTTC TGGCAAAAATCGATCACCGGAATCTGGTGAAGTTACTTGGTTATGTAGATAAGGGACATGAACGCCTTATCATCACTGAGTACGTCCCAAATGGTACCCT TAGAGAACATTTGGATGGTCAGCGTGGTAAAATTCTGGACTTCAATCAACGACTTGAGATTGCCATTGATATTGCTCATGCTCTAACTTATCTCCATCTA TATTCAGAAAAACAAATCATCCATCGAGATGTGAAATCATCGAACATTCTTTTGACGGAGAGCATGAGAGCGAAGGTTGCTGATTTTGGATTTGCGAGAT TGGGTCCTGTGGAATCCGACCAAACTCACATCTCTACCAAAGTGAAAGGGACCATAGGTTACCTCGACCCCGAATACATGAAGACCTATCAACTCACTCC CAAGAGCGACGTCTACTCCTTTGGGATATTACTGTTAGAAATTATGACAGGTCGTCGGCCTGTGGAGCTAAAGAGACCTCCTCCAGAGCGGGTGACCCTT AGATGGGCATTCAAGAAGTACAATGACAGTGCTGTGGTGGAGATGGTGGATCCATTGATGGGAGAAGTTGTGGATGCAGAAATATTAGGGAAGATGGTGA ATTTGGTGTTTAAATGTGCAGCACCGGTTAGAAACGATCGGCCTGATATGAAATCAGTAGGGGAAGAATTATGGGGAATAAGAGCTGACTACCTCAAGAG TTCGAAGCGAGGGTAA
AA sequence Show only first row Show all	>Lus10041796 pacid=23146688 polypeptide=Lus10041796 locus=Lus10041796.g ID=Lus10041796.BGIv1.0 annot-version=v1.0 MCCGLLCHCIYKRRKATSRNVHSKDHIPTESASCLEQAPSVHEKVPASPLRVPPSPSRFSPSPKLSRLGSVHLNLSQVSRATRHFSESLKIGEGGFGCVY KAQLDDGQIVAIKRAKKEHFENLRAEFSSEVELLAKIDHRNLVKLLGYVDKGHERLIITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDIAHALTYLHL YSEKQIIHRDVKSSNILLTESMRAKVADFGFARLGPVESDQTHISTKVKGTIGYLDPEYMKTYQLTPKSDVYSFGILLLEIMTGRRPVELKRPPPERVTL RWAFKKYNDSAVVEMVDPLMGEVVDAEILGKMVNLVFKCAAPVRNDRPDMKSVGEELWGIRADYLKSSKRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	0	1
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	1.0	0.8786
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	1.4	0.8428
AT5G57910			unknown protein		Lus10036255 [exp]	4.2	0.8420
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10039952 [exp]	4.5	0.8286
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	4.9	0.8309
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10028497 [exp]	6.0	0.7994
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	7.3	0.8348
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	8.0	0.8392
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	8.8	0.8285
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	10.2	0.8255

Compare expression of checked genes

Lus10041796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.